RNA id: TU313941


Basic Information

Item Value
RNA id TU313941
length 370
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G231464
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1694644 ~ 1730479 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAGGGGAAGCTGAGCTGCTTGCATCCACCTGAAAGATCCTGAATCCTTGTTGTTCCTCTGGGGTGCGAGGTGTTTAAAGCTGCCTTCCCTCCCTCAGGTTCGGTGTCCAGCAGCACGTCGGCGTCTCAGATGGCGAGCGGCGTCAGCTTGGTGTCTTTCAACAACCGCGGGGGTGTGGACGGGATGCACCAGCGCTCCTACTCCGTCTCCAGCGCTGACCAGTGGACCGACGCCACGGTCATCGCCAACTCTGGAGTCAGCACAggtaggcagaaacctcagaggagtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313836 lncRNA upstream 11689 1633206 ~ 1682955 (+) True G231458
TU313837 lncRNA upstream 11689 1635484 ~ 1682955 (+) False G231458
TU313779 lncRNA upstream 12529 1399732 ~ 1682115 (+) False G231423
TU313785 lncRNA upstream 15590 1555794 ~ 1679054 (+) False G231423
TU313839 lncRNA upstream 31686 1646192 ~ 1662958 (+) False G231458
TU313905 lncRNA downstream 3030 1733509 ~ 1747994 (+) True G231461
TU313889 lncRNA downstream 17594 1748073 ~ 1791858 (+) False G231461
TU313935 lncRNA downstream 27892 1758371 ~ 1758704 (+) False G231463
TU313992 lncRNA downstream 120697 1851176 ~ 1851846 (+) True G231494
TU313993 lncRNA downstream 125593 1856072 ~ 1912063 (+) True G231495
XM_039792664.1 mRNA upstream 173580 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 211663 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 298067 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 298067 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 441069 1237578 ~ 1253575 (+) True LOC120554718
XM_039793640.1 mRNA downstream 3102 1733581 ~ 1743392 (+) True LOC120554628
XM_039793804.1 mRNA downstream 18799 1749278 ~ 1781427 (+) True mlpha
XM_039792600.1 mRNA downstream 78666 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 98047 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 234278 1964757 ~ 2031755 (+) True LOC120554025
TU313783 other upstream 6977 1586052 ~ 1687667 (+) False G231423
TU313797 other upstream 198037 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 244468 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 291590 1340246 ~ 1403054 (+) True LOC120554625
TU313676 other upstream 592418 1069687 ~ 1102226 (+) False G231356
TU313866 other downstream 3030 1733509 ~ 1747994 (+) False G231461
TU313931 other downstream 3030 1733509 ~ 1747994 (+) False G231461
TU313847 other downstream 17594 1748073 ~ 1775613 (+) False G231461
TU313924 other downstream 17594 1748073 ~ 1775613 (+) False G231461
TU313857 other downstream 31077 1761556 ~ 1775613 (+) False G231461

Expression Profile