RNA id: TU313944


Basic Information

Item Value
RNA id TU313944
length 331
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G231467
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1625188 ~ 1632582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATACGTCGCTGAAGGGACTTTAGAGAGTTGACTTCAGCCAACCGCAAAAGTAGCTGATTGTTTGCTGATTAAATACACTTTCCTTAAGCTTAAATTAATGTcttcaaaatacacacacacacacaaacacacacacacagccaccctagccatctctctcacacacacacacacacacacacacacacacacacggacacacacacacacacacacacacacacacacacacacacacacacacacaacacagacacacccacacacacacacacacacacacacacacacacacacacacagagccccaTAAGTATATCTGAGCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313787 lncRNA upstream 36416 1583984 ~ 1588772 (+) True G231425
TU313830 lncRNA upstream 72214 1552269 ~ 1552974 (+) True G231454
TU313814 lncRNA upstream 104249 1468168 ~ 1520939 (+) True LOC120554068
TU313809 lncRNA upstream 107058 1459882 ~ 1518130 (+) True G231437
TU313791 lncRNA upstream 113167 1468916 ~ 1512021 (+) True G231427
TU313836 lncRNA downstream 624 1633206 ~ 1682955 (+) True G231458
TU313837 lncRNA downstream 2902 1635484 ~ 1682955 (+) False G231458
TU313839 lncRNA downstream 13610 1646192 ~ 1662958 (+) False G231458
TU313954 lncRNA downstream 32294 1664876 ~ 1776160 (+) True G231474
TU313941 lncRNA downstream 62062 1694644 ~ 1730479 (+) True G231464
XM_039792664.1 mRNA upstream 104124 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 142207 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 228611 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 228611 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 371613 1237578 ~ 1253575 (+) True LOC120554718
XM_039793640.1 mRNA downstream 100999 1733581 ~ 1743392 (+) True LOC120554628
XM_039793804.1 mRNA downstream 116696 1749278 ~ 1781427 (+) True mlpha
XM_039792600.1 mRNA downstream 176563 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 195944 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 332175 1964757 ~ 2031755 (+) True LOC120554025
TU313797 other upstream 128581 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 175012 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 222134 1340246 ~ 1403054 (+) True LOC120554625
TU313676 other upstream 522962 1069687 ~ 1102226 (+) False G231356
TU313866 other downstream 100927 1733509 ~ 1747994 (+) False G231461
TU313931 other downstream 100927 1733509 ~ 1747994 (+) False G231461
TU313847 other downstream 115491 1748073 ~ 1775613 (+) False G231461
TU313924 other downstream 115491 1748073 ~ 1775613 (+) False G231461
TU313857 other downstream 128974 1761556 ~ 1775613 (+) False G231461

Expression Profile