RNA id: TU314080


Basic Information

Item Value
RNA id TU314080
length 1249
lncRNA type inter_gene
GC content 0.54
exon number 8
gene id G231573
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2270053 ~ 2286959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCCTTAGGCAATAATCATCCGCGGCACTATCTACTACATTAGGCCGGATAGACAACAAACACACGGTTCCTGTGTCCTGTTGCTAACTTACAGCTAGCTTATGCTAACGTCTGTACACTTGCTACTTTGGCTGTTCGGGGGCGAATAAACAAACGACCCCGCGGTCACATTCACCGGAATGATGCTAGGAGAAAAGTAGGCATCGCTGTGAGAAGGAATATGGCGTTTGGTAtcggttttgtttgtgtttctgcaaATAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGATATGGAGCCTCAGTGGATGCCATctgggaagaagaagaggaggaaccTTCTAGATACAGACCAGCTGGAGGGAGCTCTTCTCTGAGTCTCCCTGCACATCCCGCCCCCTCAGCTGTCACCTAGCTGCCCTGCAAAAGTGGCATAGTGCCGGGGAGGTGTTCCATTTCAGAGGCAGGGAGATCTTCTACAGAGGACTGACCAAAACCGCACAGGACACCTAAACCAGGACTGACCAAAACTGCACAGGACACCTCATCATTGACAGCCTGTGTCCTTCTAGTGGAGGATTATTCCCAGAAACACATTACCCACGTTTGCTGCAGAAGTGCACATGATCTACGGACCCCTGGACCCAGTCAACCCTCATCCTCAGTCTTTACCAATACCCGAGGCCACCTGAGGGTTTAGTCGCTGGGATCAGAGCATGGTGCAGGCTCCAGAGCGAGGGCCCCTGGCTCCGGACGGCGCTCCGCCTCGGTTTGTCTCTGGCTCGCtgctcccagcagcagcagcagcggaggaggagagaggcccTCCCCGGACGGCTGCGTCCCCGCTGATGGCTCCCTGCGCTGGGGTTTGGTCCCTGTCGCTGGTCTGCTTGGACCTGGAGAAGGACAGCCGCCTGAAGAGAGACAGCTGATCGGAGGACAGAGAGTTCATTTAATCACCTCCCCGTGATGTCACACAGGCCACCTGCTGCACTCGTCCCTTCTTGAAGTGTTGGACCGGCTGCGGCAGCGGCGACTGGAAGACGAACGTCCCGTGACCGAGCTGTCCGAACTGGCCGAGGCCGAACGTGAACACGTCGTCCTCTGAGAGACAAGAAACACATTAACTAAACCTGTAATCTATGAAAGGTTTCATTCAGAATGCCTGATCGCCTCTGATCTTActgacattttctttaaaataaaaaagataaatgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314071 lncRNA upstream 53441 2214653 ~ 2216612 (+) True G231564
TU314062 lncRNA upstream 73675 2196040 ~ 2196378 (+) True G231555
TU314003 lncRNA upstream 159279 2042466 ~ 2110774 (+) False G231503
TU314706 lncRNA downstream 75934 2362893 ~ 2406781 (+) True G231910
TU314733 lncRNA downstream 136971 2423930 ~ 2436263 (+) True G231935
TU314738 lncRNA downstream 159872 2446831 ~ 2448437 (+) True G231940
TU314729 lncRNA downstream 202186 2489145 ~ 2494174 (+) True sumo1
TU314753 lncRNA downstream 214265 2501224 ~ 2503301 (+) True G231955
XM_039793734.1 mRNA upstream 12026 2245711 ~ 2258027 (+) True LOC120554727
XM_039792593.1 mRNA upstream 162926 2100152 ~ 2107127 (+) False LOC120554020
XM_039792592.1 mRNA upstream 162926 2100152 ~ 2107127 (+) True LOC120554020
XM_039792598.1 mRNA upstream 238298 1964757 ~ 2031755 (+) True LOC120554025
XM_039793630.1 mRNA upstream 430812 1828526 ~ 1839241 (+) True LOC120554615
XM_039793742.1 mRNA downstream 41552 2328511 ~ 2349442 (+) True bin1b
XM_039793743.1 mRNA downstream 41552 2328511 ~ 2349442 (+) False bin1b
XM_039793744.1 mRNA downstream 41552 2328511 ~ 2349442 (+) False bin1b
XM_039793747.1 mRNA downstream 41552 2328511 ~ 2349442 (+) False bin1b
XM_039793745.1 mRNA downstream 41552 2328511 ~ 2349442 (+) False bin1b
TU314015 other upstream 171304 2096875 ~ 2098749 (+) True G231514
XR_005638581.1 other upstream 174654 2095271 ~ 2095399 (+) True LOC120554798
TU313924 other upstream 494440 1748073 ~ 1775613 (+) False G231461
unassigned_transcript_1550 other downstream 522553 2809512 ~ 2809584 (+) True trnar-ccu_18
unassigned_transcript_1551 other downstream 523009 2809968 ~ 2810040 (+) True trnar-ccu_19
TU314879 other downstream 612854 2899813 ~ 2906486 (+) True G232031
TU315244 other downstream 1266619 3553578 ~ 3590879 (+) True LOC120554435
unassigned_transcript_1554 other downstream 1913603 4200562 ~ 4200634 (+) True trnam-cau_63

Expression Profile