RNA id: TCONS_00073059


Basic Information

Item Value
RNA id TCONS_00073059
length 3362
RNA type mRNA
GC content 0.48
exon number 16
gene id XLOC_037112
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22677503 ~ 22748015 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAAAGTAATGTGAGGGACGCTGGCAGGACACTCGACTATTGAACTTCCAAGCTGAAAACAACCGGAGGAACGAGGAAAACAGCCTGTTCAATAAGTTTGAAATGTTCGTGCAACTGAAGATTTAAAACCCAGTATGAATGCTGGGCAAGTTGCATTACAGCAGTGGACCTCGGACAGAGAGCGACAGTAACTTCGAGTGTGTGGATTATTGTTACAGGATCACTCGGATTTCACTCATGTGTTTACAGTGCAGATTCGCGCACTGGACACTCACTTCAGTCATGTATGTGCCGCTGTGATTTGGGAAGGATGGACAAAGAGAAGATCTCGGTTACCCGCTGTGGAAGGATGTGGAAACTTTGCTCATCTACACGCCACCCGGCTCTTCTAGTTTGTATAGTGTTAGAAATATTTATTCACAGCGTCAAAGGTCTTAATGTTTGTATGAGCGGCAGCGCCACGTCTTGTGAAGAGTGTCTCCTCATTCACCCGAGCTGCGCCTGGTGCGCGCAAGAGGACTTTGGACAGGCCAGAACACTTACCTCAAGATGTGACTTTAGCCAGAACTTGCAGAAGAGGGGATGCGATGCACCATTTATAGAGAACCCGAGGAGTGGCAGCTCTGTGCTCCAGAGCAAACCCTTGAGCTACAAAGGGTCAGGAGTGACCCAGTATGATGTCATCCAGATATACCCACAGAAGATCTCTCTCAGCTTAAGGCCTGGTGACCAGGCGTCTTTTGAAGTCCAAGTGCGCCCTGTGGAAGACTATCCTGTTGATTTGTACTACCTCATGGACCTCTCGCTATCCATGAAGGACGATCTGGACACGATCCGCAACCTGGGCACCAAGCTGGCTGAAGAAATGAGGAAGCTCACGAGTAACTTTCGTCTTGGGTTTGGTTCCTTTGTGGACAAGAACATCTCACCCTTCTCCTACACTGCATCCAAGTACCAGGACAACCCATGCAATGGATATAAATTGTTCCCAAACTGCGTCCCAACATTTGGCTTTCGTCACCTCTTGTCTCTTACGGACAAGGTTGATCGTTTCAATGAAGAAGTGCAGAAGCAGATGGTTTCGAGAAACAGGGACGCGCCAGAGGGAGGGTTTGATGCCATTCTTCAGGCTGCAGTTTGCaggGAGAAGATTGGCTGGAGGAAGGAGGCCTATCATCTGCTGGTGTTTGCCACTGATGACGTCCCTCACTTGGCTTTGGATGGTAAACTCGGTGGACTGGTGCATCCTCATGACGGCCAGTGTCACCTGAATGACAAGAATGAGTACAGTGCTTCAACCAAGATGGACTATCCTTCTCTGGCACTGCTTGGAGAAAAACTGGCTGAAAACAATATTTTCCTGATCTTCGCTGTTATAAAAAGACACTACGTTCTTTACAAGAACCTCACTGCGTTGATCCCTGGGACTACAGTGGAAATTTTGGACCAGGACTCCAAAAACATCATTCAACTAATTGTGAATGCCTacaatAACATAAGGTCAAAAGTTGAGCTGAGCGTGTGGGATCATCCTGAAGATCTCAGTCTGGCCTTCTCCGCTACCTGTCAAGATGGACAGCCCCTGACCGGTCTCCGCAAGTGCGCCGACCTCAAAATTGGTGACACTGTCTCCTTCAATGTAACTGTAGACGCTCGAGGATGTCCTCCGAAAGGCACCAGGAAGAGTTTCACCATCAGGCCTGTTGGTTTTAAAGACCGTCTAGAGGTTTCTGTGGATTACCGCTGTGATTGCCGCTGCACGTATCACACAAAGCCGAACAGCAGCCGCTGCAACTCTGCTGGCACTTACAACTGTGGGTTGTGCCGGTGTGAGCCTGGGTATCTGGGAGCCCGCTGCGAGTGCCAGGAGGGTGAGGTGGACCACCAGCACCTCAGTGCCTGTCGAGAAGCAGAGGGCAAGCAGGTGTGCAGTGGTCGTGGAGAATGCAGCTGTAACCAGTGCCTGTGCTATGAGTCAGAGTTTGGCAAGATCTACGGCACCTTCTGCGAATGTGACGACTTCTCCTGTGCCCGACACAAGGGCATACTCTGCTCAgGTCATGGAGAATGCCACTGTGGTGAGTGTAAATGCCATGCCGGTTATATTGGAGACAACTGTAATTGCTCGACGGAAACGGCTTCCTGTGTGTCGGATGATGGCAAGATCTGTAGCGGCCGGGGCAGCTGTGTGTGCGGACGCTGCCAGTGCACTGAACCAGGGGCATTTGGGGACACATGTGAAAAATGTCCCACCTGTCCAGATGCATGTGGAACAAAGAGGGAATGCATCGAGTGTCGTCTTTTTAACACAGGAAGACTGGCTGATAATCAGACCTGTCAGCGCATGTGCAAGGACGAAATCACCACAGTGGAAACCCTCAAAACTGACGATCCCAACGCTGTTCAGTGTGTGTATAAGACTGAGAATGACTGCGTGATGAAGTTTACATACTCTGAACATGCCAATGGACAATCAGTCCTCACCGCTCTTAAAGAGCCAGaatGTGCCGTCGCACCAAATGCTATGACCGTGCTGCTGGCTGTGGTTGGCAGTATCTTGTTGATGGGCATCGTGCTACTGGCTCTCTGGAAACTGGTCATCACTGTTCATGACCGCAGGGAGTTTGCACGCTTTCAAAGTGCACGTTCACGAGCGCGATATGAGATGGCATCTAATCCAGTTTATAAGCGGTCCGTACCAATGGAGACGGATTTCGATATGCATGGTATCAAGTCACTGAACGGAGGAGTCCACTGATTAAACACCATTTGGACTGAGGGACATGGCAGGACCTGTCCGGTGCACATCTGCACTACAGTGGAGCACAGAGATGGGATGGATTTTATGGTCTGATGCAATGAAAACTTTTTGGTGGATTAGTGGTTCATGAGGATTGGAGATAACAGTAATGAAAGTCAATTTATGAGCGGCATTTGGACACATGCTGAATTTGAGAAAAGGATTTTAAGGGCTTGCCCGCTTGACTTCGTGAGCGATGGACATTGACCCACTATGGACCGCTTGCTTGAATATAATTCGTCATTGTCTTCATTTCTAACCGTACCTCCCACACATTATGATGGATTTTGCAGTGCATTCTTTTATAGGCAAAAAGACAAgtgtatattttttaacattgtgCCTTTCCAAGCCGTGACACTTTTTATgggaattaaatatatttacatgtgACATTGTACAGTAGACAtaatagaaaacaaacaaatgcaaactTTACATCAGCTCTTTAATGAAGAGAAGGGTACTAACATGACCAGAGCAATAACGGTCTTAACTCTTTTTTGCACGTTGTTTATTAGGTTGAGGTTTATAAAGTAAAAAAGTCACTCTACAATgaa

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0016477 cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0033627 cell adhesion mediated by integrin biological_process
GO:0005925 focal adhesion cellular_component
GO:0008305 integrin complex cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005178 integrin binding molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04145 Phagosome
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko05205 Proteoglycans in cancer
ko05165 Human papillomavirus infection
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04131 Membrane trafficking
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-030131-6022 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in margin. Orthologous to human ITGB5 (integrin subunit beta 5).

Ensembl:

ensembl_id ENSDART00000080005

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074896 lncRNA upstream 34818 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073038 lncRNA upstream 316761 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00075101 lncRNA upstream 363886 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075104 lncRNA downstream 240927 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073069 lncRNA downstream 255862 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075105 lncRNA downstream 255862 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA downstream 255922 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00074897 lncRNA downstream 378142 23126156 ~ 23128231 (+) False XLOC_037122
TCONS_00073056 mRNA upstream 4677 22657221 ~ 22672826 (+) False XLOC_037111
TCONS_00073054 mRNA upstream 14769 22656976 ~ 22662734 (+) False XLOC_037111
TCONS_00073055 mRNA upstream 18661 22657026 ~ 22658842 (+) False XLOC_037111
TCONS_00073053 mRNA upstream 30037 22634073 ~ 22647466 (+) True XLOC_037109
TCONS_00073052 mRNA upstream 40756 22632126 ~ 22636747 (+) False XLOC_037109
TCONS_00073063 mRNA downstream 16221 22764235 ~ 22779813 (+) True XLOC_037113
TCONS_00073064 mRNA downstream 32887 22780901 ~ 22801904 (+) False XLOC_037114
TCONS_00073065 mRNA downstream 33005 22781019 ~ 22802172 (+) False XLOC_037114
TCONS_00073066 mRNA downstream 34013 22782027 ~ 22802172 (+) True XLOC_037114
TCONS_00073067 mRNA downstream 181661 22929675 ~ 22939510 (+) True XLOC_037115
TCONS_00073057 other upstream 14775 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 100444 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 229925 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073026 other upstream 683588 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 686291 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073071 other downstream 258437 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 298253 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073080 other downstream 616228 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 799631 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 948910 23696924 ~ 23700456 (+) True XLOC_037131

Expression Profile

//