RNA id: XR_005638427.1


Basic Information

Item Value
RNA id XR_005638427.1
length 1715
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120554422
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2941245 ~ 2945534 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagcggAACCGAAGTGCGGGTATCGTTGCACCCCTAtggttatatatatgtcaatggttgcaCCACGATGCCCACGTGACGGGAACCTCACTCTTCAATGAGAGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGGTAAGCAGAACGTATCATCTCATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGTCCCCTCCCCAGGCCAGCTGCAGAACAGGGTCCAGAGCGTCGGGAACTTCTCCACGTTGTCACGTTGCCTACGTCAGCCCCACCATCAAGGGCTCGGCCCCCACCAGCCTCCAGTGTCTGAACATCAGCGGCTGGGGAGCAGCGGGGTCAACACTGGCATCCCTATGCTGTGTGGAGCAGGGGCGCCGACTTCCACCACAAGCGAAATATCTAATAATATtttcctttacataattaaagacatttgcaccataaattgagGCAGAAAAGGCACACATTTTTACCACAATCCAGGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTATTTCGGGGAAGGCGGgatatcttttatttatttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttataaaaaaagagcctcacaatactgtatgtatttatatatttattttaaatacctTTTTTTAACTAATCAGGTTTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGTCgactgtatgtatctgtgtgcaAAGCTTACTATTAAATGgctatttatataaatatatatattgatgcAATATTATTGAATTTGAAATGTGAGCAAAAGGaaaaagtgtgaatgtgtgtacaaACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACTCTCTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTTATTCGTGGAGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaactcactgaatcaaatatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314813 lncRNA upstream 24776 2712971 ~ 2916469 (+) True G231983
TU314814 lncRNA upstream 24776 2712971 ~ 2916469 (+) False G231983
TU314907 lncRNA upstream 28467 2911276 ~ 2912778 (+) False G232035
XR_005638421.1 lncRNA upstream 28529 2909326 ~ 2912716 (+) True LOC120554419
XR_005638423.1 lncRNA upstream 28529 2909326 ~ 2912716 (+) False LOC120554419
XR_005638415.1 lncRNA downstream 1267 2946696 ~ 2949229 (+) True LOC120554415
TU314910 lncRNA downstream 1346 2946775 ~ 2949292 (+) False LOC120554415
TU314911 lncRNA downstream 1346 2946775 ~ 2949292 (+) False LOC120554415
TU314888 lncRNA downstream 4005 2949434 ~ 2950460 (+) False G232035
TU314891 lncRNA downstream 4005 2949434 ~ 2950460 (+) False G232035
XM_039793292.1 mRNA upstream 45390 2890550 ~ 2895855 (+) False zswim2
XM_039793290.1 mRNA upstream 45390 2890589 ~ 2895855 (+) True zswim2
XM_039793291.1 mRNA upstream 45390 2890609 ~ 2895855 (+) False zswim2
XM_039793279.1 mRNA upstream 69132 2852802 ~ 2872113 (+) False col5a2b
XM_039793315.1 mRNA downstream 575303 3520732 ~ 3539041 (+) False LOC120554431
XM_039793314.1 mRNA downstream 580112 3525541 ~ 3539041 (+) True LOC120554431
XM_039793809.1 mRNA downstream 602800 3548229 ~ 3552016 (+) True LOC120554783
XM_039793810.1 mRNA downstream 633317 3578746 ~ 3581403 (+) True LOC120554784
XM_039793318.1 mRNA downstream 657468 3602897 ~ 3604527 (+) True n6amt1
TU314879 other upstream 34759 2899813 ~ 2906486 (+) True G232031
unassigned_transcript_1551 other upstream 131205 2809968 ~ 2810040 (+) True trnar-ccu_19
unassigned_transcript_1550 other upstream 131661 2809512 ~ 2809584 (+) True trnar-ccu_18
TU314015 other upstream 842496 2096875 ~ 2098749 (+) True G231514
XR_005638581.1 other upstream 845846 2095271 ~ 2095399 (+) True LOC120554798
TU315244 other downstream 608149 3553578 ~ 3590879 (+) True LOC120554435
unassigned_transcript_1554 other downstream 1255133 4200562 ~ 4200634 (+) True trnam-cau_63
unassigned_transcript_1555 other downstream 1255421 4200850 ~ 4200922 (+) True trnak-cuu_16
unassigned_transcript_1556 other downstream 1255660 4201089 ~ 4201159 (+) True trnag-gcc_24
unassigned_transcript_1557 other downstream 1256828 4202257 ~ 4202327 (+) True trnag-gcc_25

Expression Profile