RNA id: TU315248


Basic Information

Item Value
RNA id TU315248
length 391
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G232254
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 3558403 ~ 3558959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTCCTTCGGGTTAGGCAATAATCATCCGGGGAACTGTCCACTCGCCGTAGCcggatacacaaacacacacacggttccTGCATCCCGTTGCTAACTTACAGCTAGCTTATGCTAACGTCTGTACTGTTGCTACTTTGGCTGTTCGGGGGCGAATAAACAAACGACCCCGCGGTCACATTCACCGGAATGATGCGCAGAGAAAAGTAGGCATCGTTGTGAGAAGGAATATGGCGTTTGGTAtcggttttgtttgtgtttctgcaaATAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGACCTGCAGCCTCAATGGATGTCATctgggaagaagaagaggagccTTGTAGAGACCAGCTGAAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638442.1 lncRNA upstream 19362 3505847 ~ 3539041 (+) True LOC120554433
XR_005638441.1 lncRNA upstream 19362 3513548 ~ 3539041 (+) False LOC120554433
TU315189 lncRNA upstream 195609 3332334 ~ 3362794 (+) True G232211
XR_005638439.1 lncRNA upstream 203389 3315070 ~ 3355014 (+) True LOC120554428
XR_005638432.1 lncRNA upstream 291409 3266121 ~ 3266994 (+) False LOC120554423
TU315227 lncRNA downstream 2548 3561507 ~ 3595683 (+) False LOC120554436
XR_005638443.1 lncRNA downstream 28604 3587563 ~ 3590874 (+) False LOC120554435
TU315240 lncRNA downstream 28617 3587576 ~ 3590879 (+) False LOC120554435
XR_005638444.1 lncRNA downstream 33394 3592353 ~ 3595701 (+) True LOC120554436
XR_005638445.1 lncRNA downstream 33394 3592353 ~ 3595701 (+) False LOC120554436
XM_039793809.1 mRNA upstream 6387 3548229 ~ 3552016 (+) True LOC120554783
XM_039793315.1 mRNA upstream 19362 3520732 ~ 3539041 (+) False LOC120554431
XM_039793314.1 mRNA upstream 19362 3525541 ~ 3539041 (+) True LOC120554431
XM_039793292.1 mRNA upstream 662548 2890550 ~ 2895855 (+) False zswim2
XM_039793290.1 mRNA upstream 662548 2890589 ~ 2895855 (+) True zswim2
XM_039793810.1 mRNA downstream 19787 3578746 ~ 3581403 (+) True LOC120554784
XM_039793318.1 mRNA downstream 43938 3602897 ~ 3604527 (+) True n6amt1
XM_039793332.1 mRNA downstream 558959 4117918 ~ 4120596 (+) True LOC120554447
XM_039793338.1 mRNA downstream 620877 4179836 ~ 4198507 (+) True LOC120554451
XM_039793340.1 mRNA downstream 676530 4235489 ~ 4241283 (+) True nop58
TU314879 other upstream 651917 2899813 ~ 2906486 (+) True G232031
unassigned_transcript_1551 other upstream 748363 2809968 ~ 2810040 (+) True trnar-ccu_19
unassigned_transcript_1550 other upstream 748819 2809512 ~ 2809584 (+) True trnar-ccu_18
TU314015 other upstream 1459654 2096875 ~ 2098749 (+) True G231514
XR_005638581.1 other upstream 1463004 2095271 ~ 2095399 (+) True LOC120554798
unassigned_transcript_1554 other downstream 641603 4200562 ~ 4200634 (+) True trnam-cau_63
unassigned_transcript_1555 other downstream 641891 4200850 ~ 4200922 (+) True trnak-cuu_16
unassigned_transcript_1556 other downstream 642130 4201089 ~ 4201159 (+) True trnag-gcc_24
unassigned_transcript_1557 other downstream 643298 4202257 ~ 4202327 (+) True trnag-gcc_25
unassigned_transcript_1559 other downstream 643973 4202932 ~ 4203004 (+) True trnam-cau_64

Expression Profile