RNA id: TU315446


Basic Information

Item Value
RNA id TU315446
length 565
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G232383
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 4263856 ~ 4267037 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTGGGCTAAACGTACCACTTGAGCCACGTTTTTGCCGATATTCGTTTACATTTTTGGAGGATTGGTAGCATTAAATTatgccgaattagctattagtaGTTTCTTATTGCATGTAGCATGGATGTACAGACAGCCATCACCGGGCTATTTTGTTAAtgaagaaaacttaaaaacgTGCGGATTATCAGGCAACTTGTGGAGTTTTAAGGAGCGTTTTTTTCCCTGTGATATGTTAGCGGATTTACGGACGTTTACTCGCGATGGCCATCGAAGAGAATGCTATTCTCATGAAGAGATGATGGGATAATGTCTACGAGAAGCTCCAGGAGGAGCTGGCCATCAACAGAGCccagagggggaggagagagagagagagggcgccACCCTGCAGCGGGCCGAGGAGCTGCAGCACCAGGCCGTGAGCCAACTGCACAAAGATCACTGccattgttttgaaaatgtcttcATCCAATGCATCATatgtgcttgctcaggcagcacatATGTTACTGCTAAGCAGAATGATCTCATTTTAGAAGGCTGAAAAATTCTAGTAATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638454.1 lncRNA upstream 31776 4198837 ~ 4232080 (+) True LOC120554455
TU315378 lncRNA upstream 46394 4215167 ~ 4217462 (+) True G232338
TU315351 lncRNA upstream 151996 4110123 ~ 4111860 (+) True G232319
TU315328 lncRNA upstream 519446 3653436 ~ 3744410 (+) True G232298
XR_005638450.1 lncRNA upstream 613595 3648259 ~ 3650261 (+) True LOC120554443
TU315500 lncRNA downstream 88956 4355025 ~ 4414011 (+) False G232422
TU315498 lncRNA downstream 130276 4396345 ~ 4399308 (+) False dock9b
TU315499 lncRNA downstream 145895 4411964 ~ 4414011 (+) True G232422
TU315506 lncRNA downstream 152504 4418573 ~ 4419316 (+) True G232426
TU315539 lncRNA downstream 238283 4504352 ~ 4507461 (+) True LOC120554498
XM_039793396.1 mRNA upstream 3183 4248430 ~ 4260673 (+) False ical1
XM_039793348.1 mRNA downstream 74425 4340494 ~ 4399319 (+) True dock9b
XM_039793350.1 mRNA downstream 74425 4340494 ~ 4399319 (+) False dock9b
XM_039793355.1 mRNA downstream 74426 4340495 ~ 4399319 (+) False dock9b
XM_039793352.1 mRNA downstream 85356 4351425 ~ 4398306 (+) False dock9b
XM_039793343.1 mRNA downstream 85359 4351428 ~ 4399319 (+) False dock9b
XR_005638583.1 other upstream 24901 4238873 ~ 4238955 (+) True LOC120554801
XR_005638582.1 other upstream 25246 4238527 ~ 4238610 (+) True LOC120554799
unassigned_transcript_1561 other upstream 39932 4223852 ~ 4223924 (+) True trnam-cau_65
unassigned_transcript_1560 other upstream 55148 4208638 ~ 4208708 (+) True trnag-gcc_26
unassigned_transcript_1559 other upstream 60852 4202932 ~ 4203004 (+) True trnam-cau_64
TU315505 other downstream 151095 4417164 ~ 4418102 (+) True G232425
XR_005638464.1 other downstream 582569 4848638 ~ 4949089 (+) False LOC120554485
TU315733 other downstream 763786 5029855 ~ 5030677 (+) False LOC120554464
XR_005638491.1 other downstream 1222092 5488161 ~ 5491967 (+) False LOC120554524
XR_005638492.1 other downstream 1222092 5488161 ~ 5491967 (+) False LOC120554524

Expression Profile