RNA id: XM_039793352.1


Basic Information

Item Value
RNA id XM_039793352.1
length 6808
RNA type mRNA
GC content 0.51
exon number 54
gene id dock9b
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 4340494 ~ 4399319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAGGAGGGAGCAAAAGCAAACCAGTGAAGAGGAGtgaatgagagggagagagcaaaGTGAGAGCATCTGAGCATCCTCATCCCCGAGCAGAAGAAGGAAGGGAAGAAGAGGAGTCGGAGAGTTGACGCCCTGCTCCGACTAAATGAGCAGCTTCTCCTCCGCGCACTCATCCCTCCATCCCTGCTGAGCCTTACACAGCAGGATACAACTCAGTGTCTCAGCACTTGGGCTGAGATTTGCCATCGAAGATAGTGGTTGTGTTTCAAGGGGAATGATTGGGAATCCTTCTCTGCTGTGGGAGAGGAAACGGTTACCTGAGTGACTTTTAAGTACACCTGTGAGAggaattttttttctacatgtgGAAGAGGACAAGGTTGAGAGATCAAGTTGGGACTGCTGCATCTACCGGGAATATAAGGCAAAGAGTTTAGAAATTAGGCTCCAACAGTGAGATCTTTTTTCTCCTGCATGGTGGTGGTGAGTGTGTGGCGGCACCATGGGATGCACCACCAGCGTGGTTCTGTTGGAGGGGCTGCGCTCTATCCTTGAGAGGAACTGTGGCTACATCAAGGGGGCAGTGGAGCTGGGGGCtctggaagaggaagaggaaacacTGAGTCTGAGGGGATCTCAACACTGGATTCCCACCACTGCTCTGATAAAGCCGAAGATCATAGAGCCTCTGGACTATGAGAATGTGCTTCTACAGAGGAAGACCCAGATCATCAGTGATGTTCTGCGGGACATGCTACAGTTCCCCACGGACGACTTCCAGATCTCCTGCCTGAGGCGCCAGGGCAGGACTCTGTTCTCCACCGTGCCAGAGACTGCAGAGAAAGAAGCTCAGTCGCTGTTTGTCCAAGAGTGTATCAAAACCTACAAGTCTGACTGGCATGTGGTCAATTACAAGTACGAGGAGTATTCGGGAGACTTCCGCCAGCTCccaaaTAAGGCGTTGAGACCTGAGAAACTGGCAGCTCACCTGTTTGAGGTGGATGAAGATGTAGAGAAAGATGAGGACACAGCCTCCCTCGGATCTCAGAAGGGAGGAGTGTCTAAACATGGCTGGCTGTACAAAGGCAACATGAACAGTGCGATCAGTGTTACTATGCGGTCCTTCAAGAGGAGGTACTTCCATCTGGCCCAGCTGGGAGATGGATCCTACAACCTCAACTTCTACAAGGATGAGAACACCTCCAAGGAACCCAAAGGAACCATCTTCCTTGACTCATGCATGGGGGTTGTTCAGAACAGCAAAGTGCGTCGGTTTGCCTTTGAGCTGAAGATGCAGGATAAGAGCACGTTCCTGCTGGCTGCAGAAAGTGAAGCAGAGATGGAGGAGTGGATCGGCACCCTCAACAAGATTCTCCACAGCAGCTTTGAACAGGCCATGCAGGAGAAGAGGAACGGAGACCTGCATGACGATGAGGAGCATGGAAAAACAGACCTCTCCTCTGGAAGTTTTCAAGACAGCTTTCAGACTGCCAGAGATATTGAGTCTAAAATGAGGAGTGAAGCTCGCCTGAAACTGTTCACTCTGGACCCTGACACACAGAAACTGGACTTCTCTGGCATTGAGCCAGACGTGCGGCAGTTTGAAGAGAAGTTCGGGAAGAGAGTCCTGGTCAGCTGTCATGACCTGTCTTTCAACCTGCAGGGCTGTGTTGCAGAGAATGAAGAGGGGCCAACAACTAATGTGGAGCCTTTCTATGTGGTCTTGTCCCTCTTCGACGTCCAGAACGGTAGAAAGATCTCGGCCGACTTCCACGTGGATCTCAACCACCCTTTGGTCCGAAAAATGACGTCAGGCTCTAGTAGCAGACAAGACTTGCACATCAATGGCAGTTGTGATGGTCCCCTGGCTGGCCCCAGGCAGGGCAGTGGGCTCCCAGTGGGTGCTCTCCAGTACCCCAGACAGGGGGTGTTTTCAGTCACGTGCCCCCATCCAGAGATCTTCCTGGTGGCCAGGATTGAGAAGGTCCTGCAGGGGGGGATCACCCACTGCACTGAACCCTACATGAAGAGTTCAGACTCCGCCAAGATGGCACAGAAGGTGCTGAAGAATGCTAAGACAGCCTGCAGCAGACTGGGACAGTACAGGATGCCTTTTGCCTGGGCTGCAAGgCCTGTGTTCAAAGATGCATCAGGAAGTTTGGACAAAAGCTCTCGCTTCTCTGCTCTTTACAGACAGGACAGCAGCAAGCTGTCAGACGAGGACATGTTCAAACTGCTGACTGACTTCAGAAAACCAGAGAAAATGGCCAAACTCCCTGTGCTCTTAGGGAACTTGGATGTAACTATTGACAGCGTGGCCCCGGATGTAACCAATTGTGTCACTTCCTCCTACATCCCTGTGAGGAACTTTGAAGGCAATGGGCCTGAAGGCGCTCTTCTGGAGGTGGAGGAATTTGTACCTTGCATCGCTAAGTGCTCCCAACCATTCACCATCTATAAAAATCACCTCTATGTGTACCCAAAACACCTCAAATATGACGGACAGAAATGCTTTGCTAAGGCGAGGAATATTGCAGTTTGCATTGAATTCAAGGATTCTGATGAGGATGAAGCCCAGCCGGTGAAGTGCATCTATGGTCATCCTGGAGGTCCTCTATTCACTAAGCAGGCATATGCAGCCGTCCTGCACCATCAGCAGAACCCAGAGTTCTATGATGAGATAAAGATAGAGCTGCCTACTCAGCTGCATGACAAGCATCACCTTCTCTTCACATTCTATCATGTTAGCTGTGACAGCAACAGCAAGAAGAAAGATCTGGTGGAGACTCCAGTGGGTTCAGCATGGCTGCCTCTGCTAAGGGATGGCAGAGTCATCATGAATGAACAGCTGCTGCCTGTGGCCGCCAATCTGCCCGCCGGGTACCTCGGCTCCCAGGATGGTGTCaacaagAACTCTGGCTCGGAGATCAAATGGGTGGACGGAGGAAAACCCCTGTTCAAAGTCTCAACTCATCTTGTTTCCACAGTTTACACTCAGGATCAGCACTTGCaaaacttcttccaccactgtcaaATCATGGAGCTGTCAGAACAAGCTTCAGAGGGAGAGCTGGTGAAATACCTGAAGAGTCTCCATGCGATGGAGGGTCATGTGATGGTCAACTTTCTGCCCACCATCCTCAACCAGCTGTTCTGCGTCCTAACCAGAGCCACACATGAGGATGTGGCTGTCAACGTGACCAGgGTGATGGTTCATGTTGTGGCACAGTGCCATGAAGAAGGGCTTGAACATTACTTGAGATCTTATATCAAGTTTGTGTTTAAGCCAGAGCCTTATTCATCCACCAATGTAAAAACGGTTCATGAGGAGCTGGCTAAAGCTATGACAGCCATTCTCAAGCCATCCACTGACTTCCTGACTAGCAACAAGCTCCTGAAGtaCTCGTGGTACTTTTTTGAAGCTCTGGTGAAATCAATGGCTCATTATCTCATAGAGAGTGGGAAGGTCAAGCTCTCCAGGAACCAGcgtttttcagcatctttctaCCATGCAGTGGAGACCCTGGTGAATATGCTGATGCCACACATCACCCAGAAATACAAGGACAACCTGGATGCGGCTCGCAATGCCAATCACAGCCTGGCTGTTTTCATCAAGCGCTGCTTCACCTTCATGGACAGAGGCTTCATATTCAAGCAGATCAACAACTACGTGAACTGTTTTATGCCTGGAGACCCAAAGACATTGTATGAATTCAAGTTTGAGTTCCTGCGGGTTGTTTGCAACCATGAGCACTACGTCCCTCTTAATCTGCCCATGCCCTTTGGAAAAGGCCGAATTCAAAGGTTCCAAGATCTTCAGCTGGACTATTCTCTGACTGATGACTTCTGTCGAAACCACTTCCTGGTGGGGCTGCTGCTGAGGGAAGTGGGCGCTGCTCTTCAGGAGTTTCGAGAGATTCGTCAGATCGCCATCCAGGTGCTCAAGGGGCTGATGATCAAACACACGTTTGACGACCGCTATGCCGCGAAAAGCCAGCAAGCCAGACTTGCCACCCTCTACCTTCCTCTGTTTGGTCTGCTCCAGGAGAACGTCCACAGACTTGACATTAAGGAGTCCGCCCCTCTCAGCAACCACAATAATGCCAGGGAGGATTCTCTGGTACCCAACTCCATGGTGACCCCTCAGAAATCTGGGAACTGCATAGAAAATGCTCTCCACAAAGATGTATTTGGAGTCATCTCTGGAACAGCCTCGCCTCACAGCTCCACTCCCAACATGAGCTCAGTTCACCATGCAGACTCCAGAGGCTCTCTGGTCTCCACTGACTCTGGAAACAGCCTGCTAGACAAGAGCAGTGACAAGACTAACTCCCTGGAGAAGAACCAGTGTGTCTCTGCTCTGGGCAGCAGTGTGCTGCGCTGTGACAAACTGGACCGGGACGAGATCAAAAACCTGTTAATGGGCTTTCTGCATATCCTCAAGAGCATGTCAGAGGAGGCCCTTTTTGCATACTGGAACAAAGCAGCTCCCTCAGAACTAATGGACTTCTTTACATTAATAGAAGTCTGCCTTCATCAGTTTAGATACATGGGGAAGAGATTCATCGTCAGCAGGAGCCAGGAGGGGGCAGGGCCTGTAGCTCCAGAAAGGAAGTCTCTGACTCTGCCCGTTTCTCGTAACAGGGCGGGGATCTTGCATGCCCGCCTTCAGCAGCTGGGAACTCTGGAGAACGCTCACACCTTCAACAACATGTACTCTCATACTGAAGCAGACGTAAGCAGCCAGTGCCTGCTAGAGGCCAATGTGTCTACAGAGGTATGCCTGACTGTGCTGGACACACTCAGCATCTTCATCATGGGATTCAAGACTCAGCTGAATTCAGATCTCGGTCACAACCCCCTGATGAAGAAAGTTTTCCAGGTCCATCTGTGCTTCCTGCAGATCCCTCAGTCTGAGGCCGCCCTCAAACAGGTCTTCACCTCAATCAGGACCTTCATCTACAAGTTCCCCTGTACCTTCTTTGACGGCCGGGCCGACATGTGTGCCTCTCTATGCTATGAAATCCTCAAGTGCTGTAACTCCAAGCTGAGCTCGATCCGCAGTGACGCCGCCCATCTTCTCTACTTCCTCATGAAAAGCAACTTCGACTATACCGGACGCAAGTCTTTTGTACGAACACACCTGCAGGTGGTAATTGCGGTCAGTCAGCTGATTGCTGATGTCATCGGCATCGGGGGTACCCGTTTCCAGCAATCTCTCTCCATCATTAACAACTGTGCCAACAGTGACAAAAGCATCAAGCACACGGCATTTCCGTCCGATGTGAAGGACCTGACAAAGCGCATCAGGACAGTGCTGATGGCCACAGAACAGATGAAGGAGCACGAGAACGACCCGGAGATGCTGGTGGACCTCCAGTACAGTTTGGCCAAGTCCTACACCAGCACGCCCGAACTCCGCAAGACCTGGGTGGACAGCATGGCTCGCATCCACAACAAGAACGGAAATCTTTCAgagGCTGCCATGTGTTACGTGCACGTTGCTGCCCTGGTAGCAGAGTACCTATGGAGGAAAGGTATGTTCAGGCAGGGCTGCTCGGCTTTTCGTGTCATCACTCCAAACATCGACGAGGAGGCAGCCATGATGGAGGACGTGGGGATGCAGGATGTTCACTTCAGTGAGGAGGTGCTGATGGAGCTGTTGGAGGAGTGTGCCGATGGCCTCTGGAAGGCGGAGCGTTACGAGCTCATCGCTGATGTCTACAGGCTAATCATTCCTATCTACGAACAGCGCAGAGACTTTGAGAAACTGACTCACCTGTATGATACCCTTCACCGTGCCTATACTAAAGTGATGGAGGtgatgcattctgggaaaaGACTGCTGGGCACATACTTCAGAGTGGCCTTCTTTGGACAGGCTGCGGGCTTCTTTGAGGATGAAGATGGAAAGGAATACATCTACAAGGAGCCAAAGTTCACTCCTCTGTCTGAGATTTCCCAGAGGCTCCTGAAGCTCTACTCCGACAAGTTTGGTCAGGAGAATGTCAAAATCATTCAGGACTCTGGGAAGGTGAACCCGAAGGACCTAGACTCAAAGTACGCCTACATCCAGGTGACCCACGTCACACCGTACCTAGACGACAAGGAGCTGGAGGACAGGAAGACCGACTTCGAGAAGAGTCACAACATCCGACGCTTTGTGTTCGAGACGCCATTCACAGAGTCGGGCAAGAAGCAGGGAGGGGTGGAGGAGCAGTGTAAACGCCGGACCGTTCTCACCACCACCCACTGTTTCCCCTACGTGAAGAAGCGTATAGCAGTCATGTACCAACACCAGACCGACCTGAGTCCCATTGAGGTGGCCATAGACGAGATGAGTGCCAAGGTGGCAGAGCTGCGACTGCTGTGCTCGGCCTCCGAGGTGGACATGATCCGCCTGCAGCTCAAACTGCAAGGCAGCATCAGTGTTCAGGTCAACGCTGGTCCTCTTGCCTACGCCAGAGCCTTCCTCGACGACAGTAGTGCCAAGAAATATCCTGACAACAAGGTCAAACAACTGAAAGAGATGTTCAGGCAGTTTGTGGATGCCTGTGGCCAGGCGCTGGGAGTGAACGAGAGGCTGATCAAAGAGGACCAGCAGGAGTATCATGATGAGATGAAGGCCAACTACAGGGACCTGACCAGAGAGCTGTCAAACATCATGCATGAACAGATTGGATGATAAACCCAGTGGAAAACGGTACAAGGAGCACTCTGTCCGACTCTGTGGGCATCTTCAACGCCATCAGTGGCACACCAGCCAGTGCCCACCCACATGGCTCAACCACCATCCTCTGATACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315445 lncRNA upstream 84388 4263856 ~ 4267037 (+) False G232383
TU315446 lncRNA upstream 85356 4263856 ~ 4266069 (+) True G232383
XR_005638454.1 lncRNA upstream 119345 4198837 ~ 4232080 (+) True LOC120554455
TU315378 lncRNA upstream 133963 4215167 ~ 4217462 (+) True G232338
TU315351 lncRNA upstream 239565 4110123 ~ 4111860 (+) True G232319
TU315499 lncRNA downstream 13658 4411964 ~ 4414011 (+) True G232422
TU315506 lncRNA downstream 20267 4418573 ~ 4419316 (+) True G232426
TU315539 lncRNA downstream 106046 4504352 ~ 4507461 (+) True LOC120554498
XR_005638478.1 lncRNA downstream 106631 4504937 ~ 4507268 (+) False LOC120554498
TU315541 lncRNA downstream 109176 4507482 ~ 4507933 (+) True G232449
XM_039793396.1 mRNA upstream 90752 4248430 ~ 4260673 (+) False ical1
XM_039793389.1 mRNA downstream 3155 4401461 ~ 4410643 (+) True slc15a1b
XM_039793376.1 mRNA downstream 27358 4425664 ~ 4470539 (+) False LOC120554468
XM_039793377.1 mRNA downstream 27358 4425664 ~ 4470539 (+) False LOC120554468
XM_039793380.1 mRNA downstream 27360 4425666 ~ 4470539 (+) True LOC120554468
XM_039793379.1 mRNA downstream 32476 4430782 ~ 4470539 (+) False LOC120554468
XR_005638583.1 other upstream 112470 4238873 ~ 4238955 (+) True LOC120554801
XR_005638582.1 other upstream 112815 4238527 ~ 4238610 (+) True LOC120554799
unassigned_transcript_1561 other upstream 127501 4223852 ~ 4223924 (+) True trnam-cau_65
unassigned_transcript_1560 other upstream 142717 4208638 ~ 4208708 (+) True trnag-gcc_26
unassigned_transcript_1559 other upstream 148421 4202932 ~ 4203004 (+) True trnam-cau_64
TU315505 other downstream 18858 4417164 ~ 4418102 (+) True G232425
XR_005638464.1 other downstream 450332 4848638 ~ 4949089 (+) False LOC120554485
TU315733 other downstream 631549 5029855 ~ 5030677 (+) False LOC120554464
XR_005638491.1 other downstream 1089855 5488161 ~ 5491967 (+) False LOC120554524
XR_005638492.1 other downstream 1089855 5488161 ~ 5491967 (+) False LOC120554524

Expression Profile