RNA id: TU315499


Basic Information

Item Value
RNA id TU315499
length 1929
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G232422
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 4355025 ~ 4414011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGCATTAGATCTTTATTTCTCATGTCACTTTGAAAGCTTGCAAGGAGCTTACATTTAACTTGGGAATCCTCAAATGACACAAGCAAAGATTATATACAGTACTATAAACTGTCAGCTATGATAAAGGAGACCAAATGTACACATTTTGTAGTTATTTCCGTAGCATATGTTTTTCTTTAAGGTATAGATATTTATTTTGCCGGAGGCAGGTGCCCATATCCATAAAGCATTCCATATTTCCATACTTAACTCTCTGCAGTTATAAAAATATCagatatttctttatttctttcaatCCCTGTGTTGACAAGTGCGTCTTGATGCAACTCCTCAACATTATTGCTGCATTAGCACAGTAGTAAATTGTGGAACTCTTAAGTAAACATATATAggaaaacatggctattagcaacttttttcattttgtttttttttctccctcttacAGGTTTCTTTAAATACTCGACACACTTTCAAAGTGCAAAAAACTgatctgaaaattaaaaaacaaaaaggtgcaAATCATACTACAAACATCTGGTGAGAGCATAAAAGAGGACATGGCACTTCTAGCACGGTGTGGAAGTGAGAACAGAAATGTCTGGAGGGAGGAAATAAAGATGGCGTTGATGTCTGCAGCTTGGCTTGTCCCGCTCTACGGTGTGGTTTGGCCTTGAGCAATTGTCATAATGCGATGCCTACGATGGTCCTTGCTAGTTCCTCCTCGCCTCCACTTCTTAAGTAATGCTAAGGATAAATTACAAGccaagggaaaaaaataatacttcaCATGATAATCAGCATTCAACCGCCTATAGTGGTTCCCCCTTGTAATTGTTCTCGGCTCCACTCAATACTGTTTACTCTCATTTAAAGAGCCACTGCCGACACAGAGCTACCTCAATTCTCGTCCTAAACAATTAATTAAATTGTCTAAACATAAGTACAGGTaggtcccccccccacccccctgactacagaaacaaaagaaaagcttCTGCCTCTAAACAAAGTAAGCTTAGTATCATAGTTAGATTGATGATTCAGCAGGTGATTGAAATGAAAACTCAGTCACTTAGAAGGAAAACGCTGACGAACACTGAACCGAATTCCACTCACTGACGAGTAAAATCAACTAAGTCTCTGATGAAATGTCAGAacgtagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctcaaAAAGGCAAGGCATTTTCTGTTCCGTTTGAGTAACTTGAAATCTTTTAAGTatctacttttaaacattatctaCAAAATGCGCATGACCATTTTGTACACAGTGATTCATTTCCCGCAATGACAACTTGTAATCATGTACAGCATGGcgacgccccccccccctcccctcctcctcccactgCCTCGGAGGACAAAGTCCACTTAAAGCACTTTACCTGAGGTTTCATAAAGAATGCTGCAATTTGCCTTTAACAGGGAGTCTTACATACACAAAgcacacgtgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcagCTTGCACACTAAGATAATATCCCTGCAGGTTCATCAAGCATGCTTTCAGAGGTTCTGGGAATATGACGCCTGCATGAAGAGGGGGGATTGAAGTCTTAGATTGGGGATTTTTCGGCTCCTTGGCGAGCAAATTCCATGTTGAGACTCCATGGTGTGAGGCTGGAGAAGTCTCGCATGTGCAGAGCTCAGAGTCCGACTTGGCTGTTGCTGTTTTTCTGGTGGTCTGGCTCCGACTCAGAGTCTTGTCCCATCGCAGCCGATTCCACGGGTTCTGCTGCCCCCTGAACATCTCCTCTCTTAAGTGGCTAAAGAAGCTCTGCAACGTGTTTCTGTTATCCTCCGCTTTGGagttcagtctttttttt

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315498 lncRNA upstream 12656 4396345 ~ 4399308 (+) False dock9b
TU315445 lncRNA upstream 144927 4263856 ~ 4267037 (+) False G232383
TU315446 lncRNA upstream 145895 4263856 ~ 4266069 (+) True G232383
XR_005638454.1 lncRNA upstream 179884 4198837 ~ 4232080 (+) True LOC120554455
TU315378 lncRNA upstream 194502 4215167 ~ 4217462 (+) True G232338
TU315506 lncRNA downstream 4562 4418573 ~ 4419316 (+) True G232426
TU315539 lncRNA downstream 90341 4504352 ~ 4507461 (+) True LOC120554498
XR_005638478.1 lncRNA downstream 90926 4504937 ~ 4507268 (+) False LOC120554498
TU315541 lncRNA downstream 93471 4507482 ~ 4507933 (+) True G232449
TU315543 lncRNA downstream 93471 4507482 ~ 4507933 (+) False G232449
XM_039793389.1 mRNA upstream 1321 4401461 ~ 4410643 (+) True slc15a1b
XM_039793348.1 mRNA upstream 12645 4340494 ~ 4399319 (+) True dock9b
XM_039793350.1 mRNA upstream 12645 4340494 ~ 4399319 (+) False dock9b
XM_039793355.1 mRNA upstream 12645 4340495 ~ 4399319 (+) False dock9b
XM_039793343.1 mRNA upstream 12645 4351428 ~ 4399319 (+) False dock9b
XM_039793376.1 mRNA downstream 11653 4425664 ~ 4470539 (+) False LOC120554468
XM_039793377.1 mRNA downstream 11653 4425664 ~ 4470539 (+) False LOC120554468
XM_039793380.1 mRNA downstream 11655 4425666 ~ 4470539 (+) True LOC120554468
XM_039793379.1 mRNA downstream 16771 4430782 ~ 4470539 (+) False LOC120554468
XM_039793378.1 mRNA downstream 17288 4431299 ~ 4470539 (+) False LOC120554468
XR_005638583.1 other upstream 173009 4238873 ~ 4238955 (+) True LOC120554801
XR_005638582.1 other upstream 173354 4238527 ~ 4238610 (+) True LOC120554799
unassigned_transcript_1561 other upstream 188040 4223852 ~ 4223924 (+) True trnam-cau_65
unassigned_transcript_1560 other upstream 203256 4208638 ~ 4208708 (+) True trnag-gcc_26
unassigned_transcript_1559 other upstream 208960 4202932 ~ 4203004 (+) True trnam-cau_64
TU315505 other downstream 3153 4417164 ~ 4418102 (+) True G232425
XR_005638464.1 other downstream 434627 4848638 ~ 4949089 (+) False LOC120554485
TU315733 other downstream 615844 5029855 ~ 5030677 (+) False LOC120554464
XR_005638491.1 other downstream 1074150 5488161 ~ 5491967 (+) False LOC120554524
XR_005638492.1 other downstream 1074150 5488161 ~ 5491967 (+) False LOC120554524

Expression Profile