RNA id: TU315500


Basic Information

Item Value
RNA id TU315500
length 430
lncRNA type read_through
GC content 0.50
exon number 2
gene id G232422
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 4355025 ~ 4414011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcagCTTGCACACTAAGATAATATCCCTGCAGGTTCATCAAGCATGCTTTCAGAGGTTCTGGGAATATGACGCCTGCATGAAGAGGGGGGATTGAAGTCTTAGATTGGGGATTTTTCGGCTCCTTGGCGAGCAAATTCCATGTTGAGACTCCATGGTGTGAGGCTGGAGAAGTCTCGCATGTGCAGAGCTCAGAGTCCGACTTGGCTGTTGCTGTTTTTCTGGTGGTCTGGCTCCGACTCAGAGTCTTGTCCCATCGCAGCCGATTCCACGGGTTCTGCTGCCCCCTGAACATCTCCTCTCTTAAGTGGCTAAAGAAGCTCTGCAACGTGTTTCTGTTATCCTCCGCTTTGGagttcagtctttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315445 lncRNA upstream 87988 4263856 ~ 4267037 (+) False G232383
TU315446 lncRNA upstream 88956 4263856 ~ 4266069 (+) True G232383
XR_005638454.1 lncRNA upstream 122945 4198837 ~ 4232080 (+) True LOC120554455
TU315378 lncRNA upstream 137563 4215167 ~ 4217462 (+) True G232338
TU315351 lncRNA upstream 243165 4110123 ~ 4111860 (+) True G232319
TU315506 lncRNA downstream 4562 4418573 ~ 4419316 (+) True G232426
TU315539 lncRNA downstream 90341 4504352 ~ 4507461 (+) True LOC120554498
XR_005638478.1 lncRNA downstream 90926 4504937 ~ 4507268 (+) False LOC120554498
TU315541 lncRNA downstream 93471 4507482 ~ 4507933 (+) True G232449
TU315543 lncRNA downstream 93471 4507482 ~ 4507933 (+) False G232449
XM_039793396.1 mRNA upstream 94352 4248430 ~ 4260673 (+) False ical1
XM_039793376.1 mRNA downstream 11653 4425664 ~ 4470539 (+) False LOC120554468
XM_039793377.1 mRNA downstream 11653 4425664 ~ 4470539 (+) False LOC120554468
XM_039793380.1 mRNA downstream 11655 4425666 ~ 4470539 (+) True LOC120554468
XM_039793379.1 mRNA downstream 16771 4430782 ~ 4470539 (+) False LOC120554468
XM_039793378.1 mRNA downstream 17288 4431299 ~ 4470539 (+) False LOC120554468
XR_005638583.1 other upstream 116070 4238873 ~ 4238955 (+) True LOC120554801
XR_005638582.1 other upstream 116415 4238527 ~ 4238610 (+) True LOC120554799
unassigned_transcript_1561 other upstream 131101 4223852 ~ 4223924 (+) True trnam-cau_65
unassigned_transcript_1560 other upstream 146317 4208638 ~ 4208708 (+) True trnag-gcc_26
unassigned_transcript_1559 other upstream 152021 4202932 ~ 4203004 (+) True trnam-cau_64
TU315505 other downstream 3153 4417164 ~ 4418102 (+) True G232425
XR_005638464.1 other downstream 434627 4848638 ~ 4949089 (+) False LOC120554485
TU315733 other downstream 615844 5029855 ~ 5030677 (+) False LOC120554464
XR_005638491.1 other downstream 1074150 5488161 ~ 5491967 (+) False LOC120554524
XR_005638492.1 other downstream 1074150 5488161 ~ 5491967 (+) False LOC120554524

Expression Profile