RNA id: TCONS_00075106



Basic Information


Item Value
RNA id TCONS_00075106
length 1139
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id XLOC_037127
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23363848 ~ 23456345 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCACGTCAAAGCTAAAACATTGGCCTGTCATaaacaaaaactacattttagtAGCGTTAACAGTATAACGTCTTAAACCAGTAAATGTAATTCGCTTATTAAGAGATACGCTGAAAAACAGAACTCAACAATAGCCGAAGCTGTCCTCTGCTGTCTCTGTGTGGAGCTTCATATGCTTCCATCTGCTGCCGGGAAACTTTAGCCAGCTTTTCTGCCAGCTCCCTCCAGCGACCTGCCACCTCCACGGCAGTGGTCAACAGCACAAAGTCCATGACCAGCCTAGCCACCAGACCCTGACAGTCCATCTTCAGAAGAGCCTAAACCACACATACAGTTTAAGATCAACAAGTTCTGTGCCTTGGAATGTTTGGAATGACAGGAAGTCTGCTTTAAAGGGGGAGGAACACTATGCTGATGCCCCAGAAGACCTGCTAAAGGACTGACTCCAAACAGAGCAATAAGATAACGGCGGTCCTGCATGGCTTTCCTCTTATCAGACATGCTCTACAAACAAACAGGAAGaaattctgCTTGTCTCACAGCAACAGAAAATACATGAATAAGCAGAAGGAAGATGAAATGTGTCTGCTGGATTGAAGTCAGCTAAAAATCCAGCCAGGAGGCTGTCGTTTCTGACCCGCTGTCAGATGTATGGAGTGGACCGTCCACTCGTTCAGTCTATTCCCATGAAGCCATGACAGATTCAGATAGCATTTGTAATCCATCAGTTTTATCTCCATTGTTTTGGCCCATGGGGTCAGTCTGTCTGCTTTAGTTTTACATCAGtactacacacagacacacacacacgcacacaaaacatCTTCACTGCATCTATTACTCAGACATTTCCCAAAAGAGGTCAAGAAGAACTGACATTATGAAAGTGTAAGATAAAACAGAGGGAATTATTCTGAACAACtcttttgtttaaaaatcttccttgtctattaaatatttacatatgcCTAATTctgttttacaaatattttatgtatgattatagtattattaatataactATTAATGTTGAGATCataataaatattagaaataGGAATGTTTTGTATCATTAAAAAGGTTTTACTGTAAGTGTAATGAAATTGCTGTCACAATAATGCAACCTTGCTAAATAGACc

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00074899 lncRNA upstream 29869 23321834 ~ 23333979 (+) True XLOC_037126
TCONS_00074897 lncRNA upstream 235617 23126156 ~ 23128231 (+) False XLOC_037122
TCONS_00074898 lncRNA upstream 235853 23126543 ~ 23127995 (+) True XLOC_037122
TCONS_00075105 lncRNA upstream 356870 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA upstream 357182 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00073086 lncRNA downstream 92453 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00073098 lncRNA downstream 389124 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00075109 lncRNA downstream 464826 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA downstream 465219 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA downstream 465551 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073079 mRNA upstream 50506 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA upstream 50506 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073077 mRNA upstream 129784 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073076 mRNA upstream 132645 23224761 ~ 23231203 (+) True XLOC_037123
TCONS_00073075 mRNA upstream 201464 23124252 ~ 23162384 (+) True XLOC_037121
TCONS_00073085 mRNA downstream 92383 23511913 ~ 23625232 (+) False XLOC_037129
TCONS_00073087 mRNA downstream 103126 23522656 ~ 23625232 (+) False XLOC_037129
TCONS_00073089 mRNA downstream 246247 23665777 ~ 23718614 (+) False XLOC_037130
TCONS_00073091 mRNA downstream 294876 23714406 ~ 23717712 (+) True XLOC_037130
TCONS_00073092 mRNA downstream 328603 23748133 ~ 23755001 (+) False XLOC_037132
TCONS_00073073 other upstream 317463 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 356870 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073057 other upstream 701120 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 786789 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 916270 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073088 other downstream 128115 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 277394 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073100 other downstream 466113 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 671377 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 964604 24384134 ~ 24387531 (+) True XLOC_037147

Expression Profile


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