RNA id: TCONS_00073091


Basic Information

Item Value
RNA id TCONS_00073091
length 249
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_037130
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23665777 ~ 23718614 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attattttctttttatcccAAGGGGGACCTTATTTTGAAGCCATAGTTGGAGTTGTCATTACGGCAGTGGTTCTGGTCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACCAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTTGCAGAGACAGCAGATGCTGCCCTTCGCAGAGACCCAGCCCTGCAGGACGCCGTGGATGAAAGCAAGAAAGAGTATTTCATATGA

Function

GO:

id name namespace
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0030863 cortical cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko05144 Malaria
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-030131-7930 Is extrinsic component of plasma membrane. Is expressed in nucleate erythrocyte. Human ortholog(s) of this gene implicated in malaria. Orthologous to human GYPC (glycophorin C (Gerbich blood group)).

Ensembl:

ensembl_id ENSDART00000189445

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073086 lncRNA upstream 188154 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00075108 lncRNA upstream 294876 23416749 ~ 23419530 (+) True XLOC_037127
TCONS_00073083 lncRNA upstream 347197 23364611 ~ 23367209 (+) False XLOC_037128
TCONS_00073082 lncRNA upstream 347402 23364611 ~ 23367004 (+) False XLOC_037128
TCONS_00073098 lncRNA downstream 90942 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00075109 lncRNA downstream 166644 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA downstream 167037 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA downstream 167369 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073102 lncRNA downstream 178081 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00073085 mRNA upstream 89174 23511913 ~ 23625232 (+) False XLOC_037129
TCONS_00073087 mRNA upstream 89174 23522656 ~ 23625232 (+) False XLOC_037129
TCONS_00073079 mRNA upstream 401064 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA upstream 401064 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073077 mRNA upstream 480342 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073092 mRNA downstream 30421 23748133 ~ 23755001 (+) False XLOC_037132
TCONS_00073093 mRNA downstream 30630 23748342 ~ 23755337 (+) True XLOC_037132
TCONS_00073094 mRNA downstream 47875 23765587 ~ 23779497 (+) False XLOC_037133
TCONS_00073095 mRNA downstream 52954 23770666 ~ 23779525 (+) False XLOC_037133
TCONS_00073096 mRNA downstream 54804 23772516 ~ 23779499 (+) True XLOC_037133
TCONS_00073090 other upstream 13950 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 158429 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 347197 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 668021 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 707428 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073100 other downstream 167931 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 373195 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 666422 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 706080 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1348949 25066661 ~ 25067730 (+) True XLOC_037151

Expression Profile

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