RNA id: TCONS_00073102


Basic Information

Item Value
RNA id TCONS_00073102
length 565
lncRNA type retained_intron
GC content 0.43
exon number 5
gene id XLOC_037137
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23895711 ~ 23906205 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTCATGATGGCTGAACTTGATGAAAAGCTGCTGTTGCAGTTTGAAACCCAGGAGCTGGAGGCTCCTGGTGGCATTGCAACGCCTCAAGTATATTCCCAGTTATTAGTCTTGTATCTCCTGCACAACGACATGAATAATGCCAGATACCTTTGGAAACGGATACCCCAAGCAATCAAAACAGCAAACCCAGAGATGGCAGCTATATGGGCTGTAGGACAGCGGATCTGGCAGCGAGACTTTCCAGGCATCTACTCTGCTATTGCTGCTTACCAGTGGTCTGAAAGCATTCTCCCTGTGATGGAAGCTTTAAGAGAGTCAACTCGTAGGAGGGCATATGGGCTAGTGGCTCAAGCTTACACCTCTATCAGTGCAGAAGACTTTGCTGCTTTTGTGGGATACTCGGTAGAAGAGGCCGTCAAAGGTGCGTGTTTTTGAGATTTGAGTGCTCATTGCTTGGACTttcatatgtttattattatttttactccAACCATTAATTTTTAGTTCATGTCTTTCTTTATGGTCTTTTGCAAagaaatataatgtaatgtttttgtcatt

Function

GO:

id name namespace
GO:0000338 protein deneddylation biological_process
GO:0010387 COP9 signalosome assembly biological_process
GO:0008180 COP9 signalosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-982 Predicted to act upstream of or within COP9 signalosome assembly and protein deneddylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8).

Ensembl:

ensembl_id ENSDART00000131953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075109 lncRNA upstream 8512 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA upstream 8512 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA upstream 8512 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073098 lncRNA upstream 86371 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00073086 lncRNA upstream 369541 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00073107 lncRNA downstream 116097 24020513 ~ 24023369 (+) True XLOC_037139
TCONS_00073116 lncRNA downstream 161821 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00073122 lncRNA downstream 216690 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073129 lncRNA downstream 288623 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073131 lncRNA downstream 305225 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073099 mRNA upstream 54089 23825440 ~ 23841704 (+) True XLOC_037135
TCONS_00073097 mRNA upstream 83157 23808546 ~ 23812636 (+) False XLOC_037134
TCONS_00073095 mRNA upstream 116268 23770666 ~ 23779525 (+) False XLOC_037133
TCONS_00073096 mRNA upstream 116294 23772516 ~ 23779499 (+) True XLOC_037133
TCONS_00073094 mRNA upstream 116296 23765587 ~ 23779497 (+) False XLOC_037133
TCONS_00073104 mRNA downstream 104463 24008879 ~ 24021162 (+) False XLOC_037139
TCONS_00073105 mRNA downstream 104463 24008879 ~ 24023353 (+) False XLOC_037139
TCONS_00073106 mRNA downstream 104597 24009013 ~ 24023369 (+) False XLOC_037139
TCONS_00073108 mRNA downstream 120611 24025027 ~ 24025404 (+) True XLOC_037140
TCONS_00073109 mRNA downstream 161439 24065855 ~ 24114583 (+) False XLOC_037141
TCONS_00073100 other upstream 9056 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073090 other upstream 195337 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 339816 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 528584 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 849408 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073118 other downstream 186491 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 479718 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 519376 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1162245 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 1169123 25073539 ~ 25074199 (+) True XLOC_037152

Expression Profile

//