RNA id: XR_005638321.1


Basic Information

Item Value
RNA id XR_005638321.1
length 2421
lncRNA type inter_gene
GC content 0.45
exon number 13
gene id LOC120554127
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11037355 ~ 11046959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGAGTTTCCTGTCGGCAGCTGGTCCTTAAAAACCAATGTAGTCATCTACTGCTCTTCTTTGTTGCAGTGCAGTCATTTAGGATTAGAGTAGGACTGTGTTACTATAGCACCATACACCTTTTAAGGAGCAATACCCAAGCTAACAACGGTAGGAGGTCTTCTCCTCGGCCGCCTTACCATGATTGAAGACGCATGCAGGGTGAAGCTGCTAAGGATGTGGAAATGGATTTGTATGACATGCCACGAGGGTCAAAGAACATGCATTTTCTGAAGTATATCATGTATTACTTCCTTGAAGACGGCCACAGATTGCTGTGCAAGTAGTAGTACTTAACTAAAGGTTTATAAAATCCCATGGAATATGAGAGGTCGCGCAGTTTGTCCACCGTTCTGCCGGGGATGATCGCGTTGAATGCGGAACTAAAGTCCGCAAACGGCACCCCTCACATACGAGCCGGGGCTCTCCAGgTGAGAGCCTCAGCTTCAGAGTAATACGAGGCGCCCGGCAACAGCAGCTGGGAGCTCCGTGGAAACCATCGTGTTCCTGTGTGAAGCTATTGAGCGATCTGCTGAAATGGAGCCCAGTACCGCTGATGGCAACCAGGACCTGGTCGTGTTCTGGGAGGAGATCCCCCCAGTGCAAAGacTCAAATGTCAGGTCCTGCAGGATGTGAAGCCCGTCCTCAGACTGACGGCCAACAGCTACCACACGCCAGCGGCCAGCAGCGATCACCAAAGGATTCACGCAACGCTCCTGCAGGTGATGGCCAGCAGCAGTCGCCTGGAGCAGAAGTTGGACCGCAGCCTTTGGACCCTGAAGGTTTTTATGGTCCTGGCCATGGTcttgacagctttgtggggcttGACTCTGTACATCCACTATTCAGCTGGCTATTTTAACCGCTGGATCACGGCTAAAAACTGAGGCAGcaaagtctgtctgtgtgtgtttgacctgCAACATAAATTCTGGACTCCTGGAAGTTTACATCTTTTTTACATTGTGATGTTTATGTGGGTCTACTGTATATGGATGCAGCTATACTCCAGAGGCATAGATAATGCACGCACACTTGTGGAAACTAATTTCCCtcctggggacaataaagtcttTCTCATCTATCCATCTCGTTCATAAATTCCATAACCCGGGAAAATAACTTCTGGACATTGCATCGCTGTCTGGTCTCCTATCACGTGTAATAGTTAGGATTTTGATCAGTGTCAAGTCTTCCTTCAAACCAATTTGGATTCATTGGACGTCCTTAAACGAGTTCTTGAAAGAAGTCGAAGTGCTTAAATTTGACatgcagttgttgttttttggacCCCTGCTTCAAGGTGGGGGCGAAGAATCAAAGAGCCGGTAAGTTTGGCTTCCCGTACATGCTCtataatactatactataatactACTATTGTTGGGTTTATTTCTTTAAGAATGATGCTTTTGCAGAAATGAATGCTTTTCATTTAGAACCATTGTTAGAGATCATCACACAACTATTACCGGTAGTAATGTTTATGATGGGTATAAACTTGTGGTAATATATGGTATTTCCATAGCTTAATAATGTGTGTAGGTGTGATCGTTCTACATTTTAGATGAGATATAGGGAAGAGTAAGAAcggatatactgtatttattgcTAAATATGGATGTGATCTGAAGTGATTTGGAGTTTTTGTCTTCATAttttaggagaagaagaagccagCATTTGAGCTATGACAGCGCTCATTTCTACCACTGTGATTGGTAGTGCTGCTGCATTTATCATTGCAACTGGATTTGTCCTTGGGCTTATCCTGAGAAAGAATTATTGCAGTACATCATACTGTACCCTGCCAGCAGCAGTTGCACCAGTAATGGGTAGATGGAGAATGTGGTTAGTTCTGCTCCTGCAGCTAACTTTGTATGTCTTCGACACCAAAGAGACTGGGAAGCAACTGCAGAAAACCATCGGTAGAGAACCAGATGTTACTCCGATATGTTCCAATACAACACTGAGTCCCATCGTCTTTATAGTGTGTAAGATCAGAACAGAGACGAGCGGCGGAGGAGAGTGCAGTCTGCTGTATCGAGATGGAGAGGACTTTAAGAACGAATGTGACTCCAGATTCACTCTTATGATGGTGAATCAGACTGTATTTCTCCACCTGTCTGGTTTGACACCAGTGGATAGTGGGAACCACACCTGTCAGTGTTCACATCCTGGTGGAACAGATATTCTCCATCTTAACATCACTGTGGAAGCGGATGAAGATGCCGGCAGTTCTACAGACATGCCTTTCCTCAATGCTGTAATTATTGGTGTAATTATATTCATCACGATAACTGGAGTTATCCTCGGCTGTATCCACGGAAGAAATCACCACAGAAGACGATCAGAAGCGCTGACAAGTCATGCAAACACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638318.1 lncRNA downstream 79065 10957910 ~ 10958290 (-) True LOC120554121
TU317697 lncRNA downstream 86207 10948468 ~ 10951148 (-) False G233954
TU317654 lncRNA downstream 113539 10915974 ~ 10923816 (-) True G233939
XR_005638315.1 lncRNA downstream 189000 10837792 ~ 10848355 (-) True LOC120554109
TU317622 lncRNA downstream 206225 10829346 ~ 10831130 (-) True G233918
TU317809 lncRNA upstream 13875 11060811 ~ 11083168 (-) True G234026
TU317810 lncRNA upstream 89691 11136627 ~ 11139188 (-) True LOC120554131
TU317815 lncRNA upstream 104906 11151842 ~ 11152551 (-) True G234032
TU317841 lncRNA upstream 237856 11284792 ~ 11285090 (-) True G234051
TU317856 lncRNA upstream 258675 11305611 ~ 11306703 (-) True G234063
XM_039792744.1 mRNA downstream 7994 11020833 ~ 11029361 (-) True LOC120554122
XM_039792746.1 mRNA downstream 18693 11013995 ~ 11018662 (-) True LOC120554124
XM_039792747.1 mRNA downstream 18693 11014355 ~ 11018662 (-) False LOC120554124
XM_039792745.1 mRNA downstream 23717 11011232 ~ 11013638 (-) True LOC120554123
XM_039792743.1 mRNA downstream 41995 10990549 ~ 10995360 (-) False LOC120554120
XM_039792756.1 mRNA upstream 48580 11095516 ~ 11101153 (-) False LOC120554129
XM_039792757.1 mRNA upstream 48580 11095516 ~ 11100543 (-) True LOC120554129
XM_039792758.1 mRNA upstream 57431 11104367 ~ 11105832 (-) True LOC120554130
XM_039792759.1 mRNA upstream 89776 11136712 ~ 11139245 (-) False LOC120554131
XM_039792761.1 mRNA upstream 93601 11140537 ~ 11150651 (-) True LOC120554132
TU317684 other downstream 68245 10967423 ~ 10969110 (-) True G233954
TU317688 other downstream 78723 10948468 ~ 10958632 (-) False G233954
TU317694 other downstream 85875 10949523 ~ 10951480 (-) False G233954
TU317708 other downstream 86726 10949523 ~ 10950629 (-) False G233954
TU317412 other downstream 649422 10384445 ~ 10387933 (-) False LOC120554082
XR_005638322.1 other upstream 343068 11390004 ~ 11441926 (-) False spega
TU318109 other upstream 1240984 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1906154 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1938881 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 2009680 13056616 ~ 13056687 (-) True trnad-guc_30

Expression Profile