RNA id: TU318107


Basic Information

Item Value
RNA id TU318107
length 2304
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G234253
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12278519 ~ 12293143 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATAAGTTACTGACTCAACAATCTGAGATTTCTTTTGAGAATTGACACAAGAAACTAGATTGAATCTGTTTTTATGttctttatttctgttgtcatcATCCTGTAGGAGCATTTGTCATCAGTACATCTCAAACATCGGAAAGTGTGCACACATCTACATGGTCTTTTAAATACACCAATACAGGCAAAGAGGGGCTGGGGAGGAGGGAGGCAGGAATATAGGAAGCACAGAAAAACACTGGAGGGGTAACTGACATCTGGGAACGGGGGAAAAGGGGGGGCAGAGAGAGTTTCACAATGGTTAGCAGTGAATGTGCTAAAACAGTTATGTTCTTTTTatccttttattttaaatgaatccCAAAAACTGTAAGTTGAGGGTTACTCCCATTCTTCCCATTTCTTCTTCGTTTCTGCTCTCGTTTCCTGTAAAGTTACTGGTTCAATCGCACAAAAGGGCCAAGTAGCTGCTCTTTTGATGGAATGTTTTCATATAAAGCTTCATGCtttccactttttgaaataaaCTTTGCCCATTCAAATACATTGTACAACCCGGTCTCTGCGAAAGGAGAAAGATCACTGGCGCACGAGAGGCCGTTTAGGCATCTGAAGATCTGACCATGAAGTATAGACACTAGAATGCATCCTGGCCATTTATACTCACACTGAAAAGTTTAAAGATTGCTCCAAATAGATCTAatttattcatcatttatttgCCATGCCAGCATAAAAGCATAGTTGTAGTCTAATACAACCACAGAGCTAATGTAAAACCAAATAAAAAGAGCAGCCCATTGgtttgtgaaaataaaaagaagggaaaaatCTATTGGAAAGCTAGCCTTTTAGCGCTTAATTCGACATAACTGCAGTGGTTATCCACATTTAAGTGCTAATAAGCCAGTGCGGCCACAGGGAACATACAAAACTGGAACAACTTTCACTACagtgacatatatatatatataaaaaaaagaaaacctaaCGAGCAAACAATTTGCCAAACAATTCAGCACATATCAGGAAATCATACGATtaaaaccaaccaaccaacaaaCGAAAATGAATGTCATGTCACGTTGTAAGCAGACATGTTTATCAGCCATTCTTTTGCAGGTACAGTTACAAGCCATGTTGCTGTAAATTAAGTCTCTCACACAGTTGATCTTTGAGACTAACGTCTAGTATCTAGTAGCTATTTCTTGCATTCAGAACCACGTAAATTCTGAATGAACATTATGCATGAGTTCACCTTACCATTTATCCCAAAACAAGTGGAatgtgatgcttttttttttttacgctttaAAATCACTGTACAAATGTTAAAACCGTCAATGCTTTCTTAGACAAGCACATCCACTCAAACCTTTAGCCGTCATCTAAGACTAAACAAAACGAGTCCATAACGAATGATTGAAAAATGAACGAGAAACAAATAAAGAGTGACTGGGTGTGACTCCCTTTTAAGGAGTGGGAATGAAGAATAATCTtagaattcagtttttttttttaaatcccattCGGAGGGCTGGAAGGGTCGCTGATAGACGAAGACAGTCAATTGACTACGACTGTAGAACCTGTTGggttaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggggtcATGTTGCAGTGAAGGACCTTGGGAGAACACTGGATGCTTATGAGATTGATGGGAGGAATGGTGTGGGCTTCGCAGGGTGATGTGAATCCGTGGCAGCCCGCTCATAAGCCCTGCTTGGCCAGGGCAGCGGTGACATCCTGGGCCAGCGTGGAGAGCTGGGGCGACTCCAGCACGTTGATGCTGCCAGAGGAGGACAGGTGAGGGGAAGTGCCTCCCGTCCCGACCCCGGGGGAGTGGGTGATGATGATTTCAGCGCCGTGATCCACCCGAGCTTTGGCCGTTTCCCGGAAGCTCAGCTTGTGGCTCTCGATcataacATTCCCCCCTCCAGGAGTGTGGCTGGTGTTGCCCAGGGAGCCGACCTTGGCATGGGCCTTGTCTTTAAAGTCCAGCTTCACATTCTCAATGCGCACGTTACCCCCCCctggtctgtggcggatgTTGGACATGGAGCCACATTTGGCGGTGATGTGGCTCAAGTCGATCTTCTTGGTCTGGATTTGGACCTGTGGGGCAGCAGCAGAAAGCATGTGTTAacataaaagtgtaaaaaaaataaataaataaaaataaaaccctgaTGGAAACTACAGAAAGTAACAGACATGATGTGTTTTGTGGTGAAAAAAAGTTAAGTACGATTAAGTCAATCTAGAGACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318086 lncRNA downstream 11442 12200076 ~ 12270069 (-) True G234238
TU318091 lncRNA downstream 68902 12210934 ~ 12212609 (-) True G234240
TU318069 lncRNA downstream 80083 12122240 ~ 12201428 (-) True G234225
TU318026 lncRNA downstream 459009 11798563 ~ 11822502 (-) True G234194
TU318011 lncRNA downstream 596344 11684622 ~ 11685167 (-) True G234181
TU318193 lncRNA upstream 74066 12358763 ~ 12361269 (-) True G234311
XR_005638300.1 lncRNA upstream 118292 12402989 ~ 12424938 (-) True LOC120554060
TU318222 lncRNA upstream 148150 12432847 ~ 12434743 (-) True G234328
TU318227 lncRNA upstream 152299 12436996 ~ 12487330 (-) True G234330
TU318234 lncRNA upstream 203208 12487905 ~ 12489008 (-) True G234333
XM_039792858.1 mRNA downstream 431688 11839717 ~ 11849823 (-) True LOC120554168
XM_039792842.1 mRNA downstream 557372 11718181 ~ 11724139 (-) False LOC120554156
XM_039792657.1 mRNA upstream 83699 12368396 ~ 12383014 (-) True obsl1a
XM_039792660.1 mRNA upstream 317547 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA upstream 317547 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA upstream 317547 12602244 ~ 12644356 (-) False LOC120554061
XM_039792659.1 mRNA upstream 317547 12602244 ~ 12642973 (-) False LOC120554061
XR_005638322.1 other downstream 839585 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1234552 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1312401 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 1330031 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 3223 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 668393 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 701120 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 771919 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 827461 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile