RNA id: TU318346


Basic Information

Item Value
RNA id TU318346
length 3965
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G234425
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13002963 ~ 13025520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTACGCCTATGATTTAAAGTAATACTATATGGGGAGATTAAAAAGTAGACTCAATGTGTATTcatgtgtgtatacatttggTATGTCATATGGACTATTAACGTATGTTTGCAtgaaagtaggctacttgtctcACTTTTCTTTTGTAATACAGTTTTAAATGCTATAGTAAAAAATACTTAATGTAACGATCGCCATATGAATAGAATAGGTGTTTTTCCTCACAGTCGCCTATTATTCACTTTGAAACCAGCTTTTAATTAGAGACATCTACATAGCCTATGTatgaatgcatgaatgaatcattttattattgtgtcatgCACACAAAAAGTATGCCCAGCCCAAACGGGCTTACAAGACACCATTACTTATAGCAGGGGACCAAATACCAAAATAGCAACATAAATTAAACATACAAACCTTCTTGTCTTTTTGCCATGCTTTAGAAACAAAAGTCGCCAAATTACATCTATTAAATCTAAACAACCACTCCATTTGGTCATCATCAGTACACCAGAACATTtgtaatataaaacacaaagagaGGATCACTGATACTGTGTAAGCTAAATActacattttacacacacaaaaaaacaaacatcaaacaCACGTCGTAATTAAAGCGTTTGCTATGGTTTTCAGCTCGGCTTCACATGACGTCGCCCTATATTTCTGCGCGCTCCCGTTTGCGCGTCCTCGCTACCAGCAATccctaatacatccatgtcagagtgatagagaaagacatggCTCTGATCCATGTCAGGTCCTAtgaatgtataataataataataacggaAGTTCCACATGCGGTAAGATGGCTGTAAGAGGGTTCGGTCATATATAACCAATCAGAGGTCTACATTGACGCAGGTTACGTATTTATATCATTACAGTTCTGCGCATGTGTAATGAGGTCTAGTGAGGAAGCAGCAGAATGTCTGGGTTAACCACGGATGTTAGAACATtagaattatattatattaacagGGTTAACTGGGAAGCAATGAGGGTTATTTATTAGCTTTAAAATGTTGAGTAGAGAGAAAGCcagctgtatttatttttatatattgtggAATTATATGGTTTATTTCTGGCCAACCTACATTTTTGCCTTAATTTAATGACTTAAATCCAGATTTTTATGGATTCTAGAGGGAGAAAAGGCATACATTTATGCCTAAAATTAAAACTTGTATACATATTTCTGAAGAATGCACCAATTGTCTTCTATGAAACCTGCTGGATAAGATCGGTCAGACTTGTACTTAAAACCacgaaaaaaaataacagtccaggttttacatttttctttttattcgaGGTGCAACTGTCTAGTGCAATTGTAACGTCACATTTGTGATGGGCTGAGGAACATGCACAAAACATCGACATACTTCTGCTaggcctttttttccccccttgccaagtgtaattatggtgcTCAGCGCTCCAGTTGCACAACGAGCCACACAAAACACTTGGCtgtacaaaagacaaaaaaaaagaaaccatcgtcattcatgaaaacaaacaaacaatatcgCATGTCCCCAAGCGGTCAAACAGTCCAGAGAATTTGAGCATTTGAGATAAGCGACGGCAGAGGAGAGTTTGCATACAGTACAATGCCGTGTGTCACTGCAGGAGAGACAGCATCTTAGTGTCGAGGGAAATAATCCTTGTGTTCCCAACCTGAGTAATGACATCACAGGTAGTTTAAAACCTGGCaaaaccatagatatatatatatatatttacacacatttatatacacatattgaataaaacaactaaaaaagcttttatatatgtatctatGGTTAGAAACCAGGCACTTGAATTGGAAATTTTGAATCTGTACAAAGTTCATTACTGAGAAACAGTCATGTCCTACTTATTTGCCTTTCcatcaattctttttttttttttttttttttttaacggatCACTAGGACATTAATCACATCAACAAGAGCGGAAACATTGAAACGAACAAACCTTTCGTACAAAAACCTTGATTCCCTGCATTAATGTCGAATGCTCCATCCAAGACCAGGGAAGAGAGTGCGTTGAGGGGGCAATGTGAACCTTGAAGAGAACGGTGTTCTCGAAGCGAACAATGAGGCACAGCTAATATATATATCTCGTAATCCTTTACAACCCCCCGCCACGCTCAACCCGGAAAATCAAGAAGACGTTACCATCGTCTTCGGATAAAGAAAAACGTTAGCTGGGCCGTCTGACTGCCATTCCAGATGAGTCGTACACATCTTAGTAGTTCGTCCACTGTTAATATCGTCTGAAAGTGCATGGAACGcagcacaacaaaaataaaaaaaataaaaatcaaatgtcaaacaaaactgaagtgtgTGCAGATGGACAGTGCTGGGTtgaggtgtgggtgtgtgtggggggggggggggccaaaGATGATGGCACAATTTCCACAGGTCACACAGCAAGGGATTCGACAGCACTGACAAGAGCGTGCAGCATACTCCCACTCGATTGGCCGGACCCTGCGTTAGCTCCTTCCTCCGCTGGTGGCTCTGACCAATGGCAGCGGACTGTCAGGTTCCTGTCAGCTCTGTCATTCCGCTCATCGACACTATATTGAAGACGACGATGGTCTGAGGCAGGTAAtaaaagcagacacacacacacacgcacgcacgcacacacacacacgcacacacacacaccgtgcaATTGCAAAGTCTTTCAGTTCAACTAAatgtgcaacaacaacaaaaattgtCCTCCGGTTCAGCGGACGTGTGCCCTCCTTGAGACGGTGGCATGTGTGTTGATGTTAGAGTCAGTTCACAGTATGGCAAAACTTCtatctcctccttttcttcttccttccaTTCCCCCTATTTCTCAtcctctggggggggggggttctccAGTGTGCCGTTTCTGTGTTACGCAGATGTGCCGGAGCTCTGTGTGGAAGGGAGGACCGGTGTGGTTCCGGCCGCGACCGGAGGCTGGGCAGCGCCATTCGGGGAGCCGCCAGTTTCTGTCTGTGCCTGAAACTGAGCCATTTGCTCGGGGCTGGCCAGGTTCTTGAGCAGGTtgttctcctgctccagctgagTGTTGCGCTCGATCAGCTCTTTAATCTGCTCCTTCAACACCTCCACCTCCTCGCGCACGGCGTACATGAGGTGGCTCTTCACCAGGTCCATTGCTTGTTCAATCTTGTTGTCGATGGCCACCACACTTGCACCGGAAGAGCTGAAAaggggaaagaagaaaaaaaaattgatgttGATGTGAATACTGCAGGTTGAATTTGAAACTGTCGTCCATCGAGGGTTTAATAGCATAGACTGCCATTTGCGAGATTATGCtgacaaaacacaaataaaaaaaaaaaaaaaaaaaaaaaaaagcccgaGGTATCACATTATGAAGctgtcatttgcaaaacaaACTTGATATTAATTCAGAGGAAATCTCAATTTAGCGTCTGCAATAAAGCAAACGGGAGGTCGGGAAGGCAGGCTTTGACTTTGATGGCGGAGAATCAATGAGCCAACATTTCATGCACGGAGCCTCGCTTTGAATCGAGCCCACGTCGCAAATAAGATGAGTGAGAGAATGCGTCGAAAAAGCCCGGTGGTGACATTAACGTTACCTATTGTCGAGGCCGACTGATGCACTCTCCTTTCCGAGCACGGAGGACAGAAACGATATCGAGAAATTCCTCAGATGACAAACGCCAAGATCCATCGCCACCGTATAACATTGGGAGTTCATGCTATCCTGCCCATTAAAACCCCCGAAGGCGATTCTTCGGCTGTGCAAACTGGAAGTCCAGTGgtataaaagtagaaaaaataGCGCATTATTGAGGACAGGATGACGGGGTCTGCTCTCCGGGGCGACCGTGGAGCTCGCAGCCGGGACAGAGCACACAAAAGACTGCAGCTCCGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318307 lncRNA upstream 66651 12951582 ~ 12951976 (+) True G234401
TU318276 lncRNA upstream 133457 12884655 ~ 12885170 (+) True G234372
TU318273 lncRNA upstream 172082 12846189 ~ 12846545 (+) True G234369
XR_005638301.1 lncRNA upstream 360150 12525903 ~ 12658477 (+) True LOC120554062
TU318255 lncRNA upstream 374759 12639537 ~ 12643868 (+) True G234353
TU318413 lncRNA downstream 143898 13169418 ~ 13169667 (+) False LOC120554638
TU318415 lncRNA downstream 159995 13185515 ~ 13185809 (+) True G234485
TU318412 lncRNA downstream 177395 13202915 ~ 13205979 (+) True G234482
TU318505 lncRNA downstream 699726 13725246 ~ 13725480 (+) True G234561
TU318506 lncRNA downstream 700558 13726078 ~ 13726690 (+) True G234562
XM_039792865.1 mRNA upstream 13824 12996053 ~ 13004803 (+) False LOC120554176
XM_039792866.1 mRNA upstream 18622 12996051 ~ 13000005 (+) False LOC120554176
XM_039792863.1 mRNA upstream 18622 12996053 ~ 13000005 (+) True LOC120554176
XM_039792862.1 mRNA upstream 18622 12996053 ~ 13000005 (+) False LOC120554176
XM_039792864.1 mRNA upstream 18622 12996053 ~ 13000005 (+) False LOC120554176
XM_039793819.1 mRNA downstream 26843 13052363 ~ 13145218 (+) True LOC120554796
XM_039793655.1 mRNA downstream 143850 13169370 ~ 13202812 (+) True LOC120554638
XM_039793561.1 mRNA downstream 190691 13216211 ~ 13611194 (+) False dmd
XM_039793552.1 mRNA downstream 190692 13216212 ~ 13686604 (+) True dmd
XM_039793539.1 mRNA downstream 190692 13216212 ~ 13686604 (+) False dmd
XR_005638294.1 other upstream 221952 12786641 ~ 12796675 (+) False LOC120554049
TU318170 other upstream 649406 12368434 ~ 12369221 (+) False LOC120554058
TU318166 other upstream 649609 12367981 ~ 12369018 (+) False LOC120554058
XR_005638296.1 other upstream 650337 12358032 ~ 12368290 (+) False LOC120554058
TU318609 other downstream 1090339 14115859 ~ 14144870 (+) True G234651
TU318853 other downstream 1781024 14806544 ~ 14838091 (+) True LOC120554715
TU318854 other downstream 1781024 14806544 ~ 14910075 (+) False LOC120554715
unassigned_transcript_1593 other downstream 2904774 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 2905303 15930823 ~ 15930904 (+) True trnas-uga_25

Expression Profile