RNA id: TU318415


Basic Information

Item Value
RNA id TU318415
length 295
lncRNA type intronic
GC content 0.41
exon number 1
gene id G234485
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13185515 ~ 13185809 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTAGTTCCTTCGTAAGAGGTATCTGTGCAGTATCCATTTGTGTAATATCCATCAACGACCACAAGGAAAAAATCTGCCAACTCTACACTAGCCTAACGTAAACGGCAAAACTCGTGAATCCTCCGTGCATCTATGGTCAACCTGGGGTGACTCTCCTACGTGCAgcgaacttttttttcttttttcaaactttatttattttggttttaacaTTTTGCGTGCAGGTAACTTAACAAGCGATCCCATTGGATGAATTCGTCCAATCACAGATGGATTCAGTTGCAGTGTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318413 lncRNA upstream 15848 13169418 ~ 13169667 (+) False LOC120554638
TU318346 lncRNA upstream 159995 13018627 ~ 13025520 (+) True G234425
TU318307 lncRNA upstream 233539 12951582 ~ 12951976 (+) True G234401
TU318276 lncRNA upstream 300345 12884655 ~ 12885170 (+) True G234372
TU318273 lncRNA upstream 338970 12846189 ~ 12846545 (+) True G234369
TU318412 lncRNA downstream 17106 13202915 ~ 13205979 (+) True G234482
TU318505 lncRNA downstream 539437 13725246 ~ 13725480 (+) True G234561
TU318506 lncRNA downstream 540269 13726078 ~ 13726690 (+) True G234562
TU318516 lncRNA downstream 560261 13746070 ~ 13749721 (+) True G234571
TU318596 lncRNA downstream 904979 14090788 ~ 14091270 (+) True G234640
XM_039793819.1 mRNA upstream 40297 13052363 ~ 13145218 (+) True LOC120554796
XM_039792865.1 mRNA upstream 180712 12996053 ~ 13004803 (+) False LOC120554176
XM_039793561.1 mRNA downstream 30402 13216211 ~ 13611194 (+) False dmd
XM_039793552.1 mRNA downstream 30403 13216212 ~ 13686604 (+) True dmd
XM_039793539.1 mRNA downstream 30403 13216212 ~ 13686604 (+) False dmd
XM_039793558.1 mRNA downstream 30403 13216212 ~ 13686604 (+) False dmd
XM_039793549.1 mRNA downstream 30403 13216212 ~ 13686604 (+) False dmd
TU318348 other upstream 159995 13002963 ~ 13025520 (+) False G234425
TU318349 other upstream 159995 13002963 ~ 13025520 (+) False G234425
TU318345 other upstream 163527 13002963 ~ 13021988 (+) False G234425
XR_005638294.1 other upstream 388840 12786641 ~ 12796675 (+) False LOC120554049
TU318170 other upstream 816294 12368434 ~ 12369221 (+) False LOC120554058
TU318609 other downstream 930050 14115859 ~ 14144870 (+) True G234651
TU318853 other downstream 1620735 14806544 ~ 14838091 (+) True LOC120554715
TU318854 other downstream 1620735 14806544 ~ 14910075 (+) False LOC120554715
unassigned_transcript_1593 other downstream 2744485 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 2745014 15930823 ~ 15930904 (+) True trnas-uga_25

Expression Profile