RNA id: TU318516


Basic Information

Item Value
RNA id TU318516
length 277
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G234571
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13746070 ~ 13749721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctttcctttctccatcccgccttctccctccctctctatctctctgtttctcttttctgtctctctctctccctgtttctctctcttttctctctctctgtcctctctccatccctccctctctctctgtctctctctctctctttttctctctctctccttctttctccatcccgccttctccctccctctctatctctctgtttctcttttctttctctctctctccctgtttctctctcctttctctctctctgtcctctctccatccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318506 lncRNA upstream 19380 13726078 ~ 13726690 (+) True G234562
TU318505 lncRNA upstream 20590 13725246 ~ 13725480 (+) True G234561
TU318412 lncRNA upstream 540091 13202915 ~ 13205979 (+) True G234482
TU318415 lncRNA upstream 560261 13185515 ~ 13185809 (+) True G234485
TU318413 lncRNA upstream 576403 13169418 ~ 13169667 (+) False LOC120554638
TU318596 lncRNA downstream 341067 14090788 ~ 14091270 (+) True G234640
TU318636 lncRNA downstream 431376 14181097 ~ 14181507 (+) True G234674
TU318680 lncRNA downstream 544935 14294656 ~ 14294872 (+) True G234709
TU318688 lncRNA downstream 552915 14302636 ~ 14303850 (+) True G234713
TU318689 lncRNA downstream 582437 14332158 ~ 14332506 (+) True G234714
XM_039793563.1 mRNA upstream 59466 13491622 ~ 13686604 (+) False dmd
XM_039793278.1 mRNA downstream 556248 14305969 ~ 14325821 (+) True arl6ip6
XM_039792665.1 mRNA downstream 670288 14420009 ~ 14434616 (+) True cars2
XM_039792677.1 mRNA downstream 734447 14484168 ~ 14486243 (+) True LOC120554078
XM_039793631.1 mRNA downstream 749563 14499284 ~ 14508412 (+) True atp1b1b
XM_039793119.1 mRNA downstream 782069 14531790 ~ 14544618 (+) False LOC120554303
TU318348 other upstream 720550 13002963 ~ 13025520 (+) False G234425
TU318349 other upstream 720550 13002963 ~ 13025520 (+) False G234425
TU318345 other upstream 724082 13002963 ~ 13021988 (+) False G234425
XR_005638294.1 other upstream 949395 12786641 ~ 12796675 (+) False LOC120554049
TU318170 other upstream 1376849 12368434 ~ 12369221 (+) False LOC120554058
TU318609 other downstream 366138 14115859 ~ 14144870 (+) True G234651
TU318853 other downstream 1056823 14806544 ~ 14838091 (+) True LOC120554715
TU318854 other downstream 1056823 14806544 ~ 14910075 (+) False LOC120554715
unassigned_transcript_1593 other downstream 2180573 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 2181102 15930823 ~ 15930904 (+) True trnas-uga_25

Expression Profile