RNA id: TU318670


Basic Information

Item Value
RNA id TU318670
length 1936
lncRNA type sense_over
GC content 0.32
exon number 2
gene id arhgap1
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14194312 ~ 14290043 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataaataaataaaattatagtTAAGCAGCTTAGTGCACTTTTGACATACAGTTAACAGTCATGTTGTTGatcatactgtatatgactTTGGCTGGAAGtcacaagaaaaaaacagggttagctgtttaCCTTTGTAACTATGATCAGTTGTCAGTTGTGCAGTTTATGTAAAAAGTCCACGCTTTGCTATGCTATTGAATcagttgtcttttattttatcaGTAGTCAATCTACTGGCATATGTGTTATGTTCCTGATACTAAATATGATGTCACTGAAGATCACCAAAAGATCAGATATTTAGTTTGACTTCAGTTGCTGAAAGCAAGAAAGAAtcttattgtattgtataactCCCAGTTATGTCAATTGACATGCTATTGGTGTatatgggtgtgtgtttgtgtgtaaatgctAACTCAGCTGGACCCAGCGCATTTGAATAGACAAAATATGTCTAACTGTTAGGGATATATATTATTAGTATAACTAGGGCTCCTGTCGGTTGAGATATGTGAATATGCATGTTTTGTTGTCAGGTGAAAACATGGTAACTCCATTGTTGATTTTTATTTGACACAATAAGAACAATGATCTAAGGTTTATAGAGTTGTACAACCATTCTCTCAAAACcttgttaaacaacaaaattaAGATGAAACCAAGGCAGTTTTTCTTGGCTCATGAAAAATTGAAATCTTGGAGGTACACGTTTTATAATTTGACAACAgcaatatgtatgtgtgtgcatgcttgtgcCTTATTTGTTTCTCCCAAGTTGATCATGTGATTAGCCATCAAAGTGCCAGTGTGCTCATTCTGCCAAACGACGCGAGTTCAACAAAGCTTAGTGTCTGTTGTAAGACAGTGTTCAAAACAGCATGTTAACGGCTGAAGGTGCCTTGAACGGAAaacacaaatgcaacaaaagaaTCCTGTGCAAACTCCTAGGCTTGTTGACACAGCTCTGTGTATGGATGATCATGGGCTTAACTAATTTAACctcataaatattaaatatgaaaGATGATTAAAGCTTCCTTAAAATTTGAGTTTTGTAAATAATCTTTATTTTGTGAtgtacaaaaaaattaattctgaaatgaaatacaaaattgtagatttaaataaagattaaagtcagattttttttacttctaatcatatactgaaaaaaaatctttaaaatcataTTTGTCTTTGATTCAGgattctcatgttttttttaatcgtgtACCCCTTCTCCTGAGTAACTTCGTTTTTCCCAGAATTTTTACAATATCCagtcaatgaaataaaaatataattcaaaaaAAATTCAGATTATTACCAttattgtacaattaggatatgctGTTGTTTCAGGTTTATAAAAATGTTGCACAATAAAATTCTTTTTCCACTTTATAATCTTGATGAAAAAGATgtcagccattttttttttactgtaattctTATTTTTACAGTCATATCAACCAAGTACAATTtctgtttatttcattttaacactTTCTCCTCAACTCTGCCAATCAATTACAGCCCTGTCCAATCTATGGAtcttttactgtaattgttgccATAGTGATAGTGAAAAATATTTCTCTGTTGGAGaaattagttagttagtttccAGGCTGATTCATTGTTACTTAGTGATCACTTtttttagtcagtacttttgaTATGTTGTGGATCTAGTCTTAAATGTTATATTATATGTGTTAATATATTGTAATAGTAATGTGTGCAAACAATAAACAAATGGTAAAGGAAAGCCCAGGTTCTACTGTTGTGATTACAAAGTTCTCACATAATTTTATACTGATTGGGAAGAGTACCCCCACAGTTTTTGACCAAAAACCACTCAATAGGgcaaattcttaaaaaaatgcaaatacacaAGGGAATGCTGCAGGTTTTCACATCACAAGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318638 lncRNA downstream 4074 14190031 ~ 14190238 (-) True G234676
TU318637 lncRNA downstream 4911 14189095 ~ 14189401 (-) True G234675
TU318635 lncRNA downstream 13287 14180705 ~ 14181025 (-) True G234673
TU318623 lncRNA downstream 49442 14115855 ~ 14144870 (-) True G234664
TU318711 lncRNA upstream 84942 14297080 ~ 14297377 (-) True G234736
TU318727 lncRNA upstream 143957 14356095 ~ 14356400 (-) True G234752
XR_005638310.1 lncRNA upstream 265288 14477426 ~ 14483964 (-) False LOC120554079
TU318761 lncRNA upstream 265288 14477426 ~ 14484029 (-) True LOC120554079
XR_005638309.1 lncRNA upstream 265296 14477434 ~ 14483964 (-) False LOC120554079
XM_039793131.1 mRNA downstream 106830 14010265 ~ 14087482 (-) True gtf3c3
XM_039792539.1 mRNA downstream 185889 13797432 ~ 14008423 (-) True hecw2b
XM_039793062.1 mRNA downstream 212942 13980051 ~ 13981370 (-) True LOC120554288
XM_039793522.1 mRNA downstream 482478 13706250 ~ 13711834 (-) True LOC120554566
XM_039792869.1 mRNA downstream 1168768 13021048 ~ 13025544 (-) False zgc:65895
XM_039793277.1 mRNA upstream 78535 14290673 ~ 14299690 (-) True LOC120554388
XM_039792668.1 mRNA upstream 144692 14356830 ~ 14399370 (-) False slc19a2
XM_039792667.1 mRNA upstream 144692 14356830 ~ 14399370 (-) False slc19a2
XM_039792669.1 mRNA upstream 144692 14356830 ~ 14392648 (-) False slc19a2
XM_039792670.1 mRNA upstream 144692 14356830 ~ 14391028 (-) True slc19a2
unassigned_transcript_1568 other downstream 1082084 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 1137625 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 1208424 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 1240187 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 1901169 12287920 ~ 12293143 (-) False G234253
TU318891 other upstream 635696 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 750223 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 757384 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 1574183 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 1576189 15788327 ~ 15788399 (-) True trnak-cuu_17

Expression Profile