RNA id: TU318711


Basic Information

Item Value
RNA id TU318711
length 298
lncRNA type intronic
GC content 0.35
exon number 1
gene id G234736
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14297080 ~ 14297377 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAATATGGGTGCAGTCAGAGGTGTCCCCTGACAAAAATCATTGTCTGGAATTATTCCTTGTTAATGTTGTATTCTTGTAAAACTCAAAATATACATTCCTTTCACAATCTACTTATTGGTTTTGTACAAAGGGCAGGCACAGGTTACATATATTTTACTTAAGGTGAATATAATCCATTAATCTAGTTTTTAAATGTACGTTGTATTAACACCTTATTTTGAAAACCGGAAGTAGTCCCATGTGTATCATCTCCCTAACTTCGCTACTCGATCTGGGCCGTTTGAATGCATTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318672 lncRNA downstream 76912 14195210 ~ 14220168 (-) False arhgap1
TU318670 lncRNA downstream 84942 14194312 ~ 14212138 (-) False arhgap1
TU318671 lncRNA downstream 93879 14194493 ~ 14203201 (-) True arhgap1
TU318638 lncRNA downstream 106842 14190031 ~ 14190238 (-) True G234676
TU318637 lncRNA downstream 107679 14189095 ~ 14189401 (-) True G234675
TU318727 lncRNA upstream 58718 14356095 ~ 14356400 (-) True G234752
XR_005638310.1 lncRNA upstream 180049 14477426 ~ 14483964 (-) False LOC120554079
TU318761 lncRNA upstream 180049 14477426 ~ 14484029 (-) True LOC120554079
XR_005638309.1 lncRNA upstream 180057 14477434 ~ 14483964 (-) False LOC120554079
TU318784 lncRNA upstream 240464 14537841 ~ 14542320 (-) True G234802
XM_039793273.1 mRNA downstream 7037 14201336 ~ 14290043 (-) False arhgap1
XM_039793275.1 mRNA downstream 7037 14201336 ~ 14290043 (-) False arhgap1
XM_039793274.1 mRNA downstream 7037 14201336 ~ 14290043 (-) False arhgap1
XM_039793272.1 mRNA downstream 7037 14201336 ~ 14290043 (-) False arhgap1
XM_039793271.1 mRNA downstream 7037 14201336 ~ 14290043 (-) False arhgap1
XM_039792668.1 mRNA upstream 59453 14356830 ~ 14399370 (-) False slc19a2
XM_039792667.1 mRNA upstream 59453 14356830 ~ 14399370 (-) False slc19a2
XM_039792669.1 mRNA upstream 59453 14356830 ~ 14392648 (-) False slc19a2
XM_039792670.1 mRNA upstream 59453 14356830 ~ 14391028 (-) True slc19a2
XM_039792671.1 mRNA upstream 59453 14356830 ~ 14390576 (-) False slc19a2
unassigned_transcript_1568 other downstream 1184852 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 1240393 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 1311192 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 1342955 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 2003937 12287920 ~ 12293143 (-) False G234253
TU318891 other upstream 550457 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 664984 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 672145 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 1488944 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 1490950 15788327 ~ 15788399 (-) True trnak-cuu_17

Expression Profile