RNA id: TU319100


Basic Information

Item Value
RNA id TU319100
length 218
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G235056
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15614216 ~ 15614553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggaaatgcgccttatatgacaaacatcatccgatttacatgaaacttagaatgtgtggtctacatgtgatactgagccggcccctataatataaccacgcccacttacgcaggccacgccccctttcataacatttggaccatttaaggtagagtcttgtgtgaggtatcattgaactcagcagagacttccttcttcattggtgatggtttggccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638356.1 lncRNA upstream 47653 15563750 ~ 15566563 (+) True LOC120554283
XR_005638342.1 lncRNA upstream 140209 15468814 ~ 15474007 (+) True LOC120554271
XR_005638339.1 lncRNA upstream 413475 15197999 ~ 15200741 (+) True LOC120554269
XR_005638340.1 lncRNA upstream 413475 15197999 ~ 15200741 (+) False LOC120554269
TU318920 lncRNA upstream 568696 15045224 ~ 15045520 (+) True G234919
TU319121 lncRNA downstream 52319 15666872 ~ 15667356 (+) True G235074
TU319126 lncRNA downstream 62424 15676977 ~ 15683490 (+) True LOC120554272
XR_005638343.1 lncRNA downstream 62685 15677238 ~ 15682815 (+) False LOC120554272
TU319214 lncRNA downstream 269210 15883763 ~ 15884010 (+) True G235152
XR_005638350.1 lncRNA downstream 510908 16125461 ~ 16126641 (+) True LOC120554276
XM_039793049.1 mRNA upstream 155556 15456557 ~ 15458660 (+) True LOC120554262
XM_039793042.1 mRNA upstream 158079 15450271 ~ 15456137 (+) True LOC120554259
XM_039792542.1 mRNA upstream 241367 15334240 ~ 15372849 (+) True LOC120553993
XM_039792541.1 mRNA upstream 329031 15284502 ~ 15285185 (+) True LOC120553992
XM_039793022.1 mRNA upstream 543832 15061264 ~ 15070384 (+) False LOC120554245
XM_039792947.1 mRNA downstream 45742 15660295 ~ 15665637 (+) True LOC120554210
XM_039793002.1 mRNA downstream 93977 15708530 ~ 15856139 (+) False LOC120554235
XM_039793004.1 mRNA downstream 93977 15708530 ~ 15725044 (+) True LOC120554235
XM_039793005.1 mRNA downstream 93977 15708530 ~ 15725044 (+) False LOC120554235
XM_039793006.1 mRNA downstream 94171 15708724 ~ 15725044 (+) False LOC120554235
TU318854 other upstream 704141 14806544 ~ 14910075 (+) False LOC120554715
TU318853 other upstream 776125 14806544 ~ 14838091 (+) True LOC120554715
TU318609 other upstream 1469346 14115859 ~ 14144870 (+) True G234651
TU318348 other upstream 2588696 13002963 ~ 13025520 (+) False G234425
unassigned_transcript_1593 other downstream 315741 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 316270 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1595 other downstream 319082 15933635 ~ 15933716 (+) True trnas-uga_26
unassigned_transcript_1596 other downstream 323832 15938385 ~ 15938466 (+) True trnas-uga_27
unassigned_transcript_1597 other downstream 326310 15940863 ~ 15940943 (+) True trnas-uga_28

Expression Profile