RNA id: TU319122


Basic Information

Item Value
RNA id TU319122
length 3625
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G235075
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15660293 ~ 15665882 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAAACCGATTTTCATTTGAATAATCTGATATCAATTCATGAACCCCAGAATTGATCTGTCTCTGGTATTAGTGGTGGAAATCACCAGAAGACccacaatacaatattattacaattttaaatatatttattgtgatATTCTGCAGTATATTGCagtttattacctttttttccaacttcaaattatgtccccaaaagaaaaacattgtcAACAtcagttttatctaaaaagatacatttctcaacaaaacaaacttaactgcaccatctagtggacttaaaaagcaattgattttattctagtaccaaaaagttgaattctcatgtgcaatttatataataaaagattaaTACTTGGCGTTTTGATATGGTattgtatcgatacagtatacAGACATAACCCGCTTTAAATTgatctaaaataaaaaccataacAGCTAGAGCATTCACTCTTTTTGCAGCACAAAGCTAAGGCATCTTTCCTTCACATCATCACGTTGTAcataggcctgtaacaatttcaaattttgctggacaatTAATGGTCTAAGAAATAATTGTAATTaccaatataattgtctcttttagtgaaatacatttatttatttatttatttctcactttttcaaacaaattgaagtttaaatgaatcccaggatacatattttattatatatcactgttatgtgactGAGATACGCAGGTTCACAGCCTACaaagtaaaccacgcctctttattatcataaaacattgtattttttgctTAAATGGACAAAAAAGTAGAACATTTATTCCCGtcaaaaaacaaagcattaatcataaacaaaaaaaagcagcccaggatgtttggagttgctatggcaacaagtGACAGCTGCCGCTAGCATAGTTTTAGCCAAACAGTCCGAGCAATAATCACTTTTACAATTTGgcacatctaaacaaaatcaaacattaCCATCAACATGGTATACCCCTTAGGACCTTAGCAAAAGTTAGCAAACAAGTTCTGTACAGATCCCCGTGGAACTACCTTAGCATAATACCGGCGATGGTGGATCCAAACAATAGTGTGACCAATCTATTAccaaaaaaaatgctttaattcTTAAACTGGTTGTACAAAATAACGTGATTATGTGGTtagacaattatttaataattgttacaggcctatcTCTACGCTTGTGATGTCGTCATCACCTTATGTGAAGTCCGGTGCTAAACCGAGTGACACCATTCAAATGCAGATGAAACTATAaaaacaatacccagccctagttaagTTATTACGGGTCCATAACATTAATAATGACCGACTAATACACcttgattttatttcttaatgCACCTTATGCATGGCGTAAGGTCAAcaaaatactatgactttttgcaaTTTTCAGCCCAGTCATTCAAGTTGCTGTCCCAGATTACCGATTCCCTCATTGTCCAAATCGTCCTCACAGGCTTCAGGCTCACAGTAGCTCCGCGAGTTCTCATACAAGAAGACCTGCTGATCTACTAAAGCTGGGGCTATGCGGTTCCTTTTCCCAGACAGGACAGTCCCAGAGGAACTTAACAGCCTGTGAGGAGGGACACAGGTGGCAGGAACACACCAGTACTTCTGGAGCACCTTGGGGAGGGTGGGAAACAAGGGCGCATGACTCGACCACCACAGCAAAGGGTCTTCATTCAGACCTAGGACTCTTTGTGATTTGTAGTTGCTCAGCTCCTCTACAACCTGGGCATGCAGCTCCTCCTGGCTCTGGTCTGCATCGGTCTGACGAAATATGGCAGCCAAAGGGTTGTCTTGGGTTGCACTGCCGACTGAAGACTCTCGTAGAGGCGTCTGCTTTTTGCTAGGTGGCTCGTCTGATATCAAGGAGAATTCACCTAGGCACGGTCGCTCGGCAATCTGCTTCTCAAGGACCGCTTTTGCCTCGTCAACGATGTTACTCTCAATTTTGGAGCGTTCCTGAGTGGACAGGAAAGGCAGCTTCTTGTACCGAGGATCCAAGAATGTCGCAATGTTGAGGAAAGTTGAAATTTCTTGCGATAGCTGGGTGTTCTGTGAATAGGTGCTTGACAGGACCTTTGAGATGACCTCTTTGGTCATGCTGATCTCTTTGAGGTCCCCTTCCTTTGCTTTAAGAGTGGTGTTCAGCAGCATATGAAGCACGGGCCTAACCATGCTAATGGTCGGGTACCTGCAAGAAGTGATCATGTTTGCCACAACTTTAAAAGGCTGGAGAACGCAAATCAAGCCCTCCAACAAGGCCCAGTCAGGGCTATCAAAGCTGAAATGATGAGCGCTTGAACTCTCTACAAGCGTTGCGGTTACAACAACCTGTTGCTCTTTCAGTCGCTGCAACATTGCCAACGTGGCCAACCAAGATCTACCTCGGTCTGTGATGAGCGCACACTGAGGGAGGCCATGCTGCTTCTGTTTATCCCTTAGCAGATACATTGCCGGTTCTTGGAAATGATCGATGAGCTTGCGGCAACATCCCAAAAAGCTGTCGACACGCGGCAGCTGGAAGGCTTCATCCATTGCGCGATTGACAGTATGTCCGAGGCAAGGCATTTCCACGGACAGCTCCAGGAGGGAGCATGCTTTCATGATGTCCACTGAACCATTTGTGGTGGCACCGCTGACTTTATGGGTTATTCCCCATTCAACAAATGCCTCGTACATCGCTCTTGTGATGTTCTCGGCCGTGTTGTCCTCTTGCACTTCGAAAGTTTTAAGACACTTGTTGGTCATAGAGAAGCCAGTAGCACTGATGTAATTAACAGAATGCACAGAGAGCGAAATGTACGACCTGTTCTGGGTTTGGCTTTGCCAAAGATCTGTAGTAACGCCACAGTTCACAACCCCAGCAAGTTCACTAAAGACCATGTCCCGGGCACGGCAGTACATCTGAGGAAGCATTTTAACTGCCAGGTCGCCTTTGCTCGGTGGAGAGTACCCAGGGTCGACGGTACTCATTAACGTCTTGAAAGTAGGCTCTTCAACGACAGACACAGGGTACAACCCCTCACAGATGAAGTTGATGACAGCGGTTGTCAGATCATTTTGTCGTCTGTTTTCATAGCCCGAGCTCTGCCTTAAGTTGGTGTCCTGCGATTGCTGCTGAACGTGTGGACCCGAGGGCTCAGTCTTTATCCTGGAGAACGCTGTGGCAAATGCCTCTCGCATCTGATCCGTGTTGCTCTTCACAAACTCGCTGAACTCTATAGGGTGGTTCTTTTCAAGGTGGTAAGAAAGATTGGAGGTGTTTCCAGAGTAGGCAATTTGACTCATACATACACGGCAGTAAATCCGTTTCCAGTGCAATATGCAGCCATAGGCGTCTGTGTCAAAGCCAaagtatttccagactttgctTTTCGCCCGCGGGTGTGCGACCAGATTGGGGCCAGAGCATGAAGGTCCTGAACTTTTACCCTCCATTGGTTCCTTTTTGTAAGCAATCCACTTTGATGCCTTCACTTACTGAGCACCTGAGCGTAAAAGGTCTGTTGAAGGTCTGATAGAGAAGAACTTTGATTCCGCAGAAATGCAGCTCGAGAAGAGGGACCAGCACTGACAGAAGCAACATCCTTCTGTTGTTTCCGAGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319096 lncRNA downstream 102877 15556638 ~ 15557416 (-) True G235053
XR_005638347.1 lncRNA downstream 174806 15482306 ~ 15485487 (-) False LOC120554274
XR_005638348.1 lncRNA downstream 174806 15482306 ~ 15485487 (-) False LOC120554274
XR_005638346.1 lncRNA downstream 174806 15482306 ~ 15485487 (-) True LOC120554274
XR_005638351.1 lncRNA downstream 230917 15428280 ~ 15429376 (-) True LOC120554277
TU319213 lncRNA upstream 216743 15882625 ~ 15883001 (-) True G235151
XR_005638352.1 lncRNA upstream 307693 15973575 ~ 15991395 (-) True LOC120554279
TU319276 lncRNA upstream 465704 16131586 ~ 16132246 (-) True G235208
TU319284 lncRNA upstream 534450 16200332 ~ 16200591 (-) True G235215
TU319295 lncRNA upstream 579245 16245127 ~ 16245397 (-) True G235225
XM_039793012.1 mRNA downstream 5728 15636430 ~ 15654565 (-) False LOC120554239
XM_039793011.1 mRNA downstream 5728 15636430 ~ 15654565 (-) True LOC120554239
XM_039793032.1 mRNA downstream 26673 15623152 ~ 15633620 (-) False LOC120554251
XM_039793031.1 mRNA downstream 26673 15623152 ~ 15633620 (-) False LOC120554251
XM_039793030.1 mRNA downstream 32708 15623152 ~ 15627585 (-) True LOC120554251
XM_039792966.1 mRNA upstream 6255 15672137 ~ 15677967 (-) True LOC120554219
XM_039792969.1 mRNA upstream 18685 15684567 ~ 15699703 (-) True cep70
XM_039792970.1 mRNA upstream 18685 15684567 ~ 15699670 (-) False cep70
XM_039792968.1 mRNA upstream 18685 15684567 ~ 15699560 (-) False cep70
XM_039792961.1 mRNA upstream 72560 15738442 ~ 15754859 (-) True LOC120554215
XR_005638386.1 other downstream 646479 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1569 other downstream 697860 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 810556 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 2548065 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 2603606 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1570 other upstream 120439 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 122445 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 123766 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 124334 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 125435 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile