RNA id: TU319126


Basic Information

Item Value
RNA id TU319126
length 1777
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC120554272
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15676977 ~ 15683490 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGCTTCTTCTCGTGAGAGCGACTCGGTGGCAGGTGTGTCTCTGGGACTGGGTCCGGCTGCCTGCTCCGGTAATCCTGTGGGACCAGTTTGTGCAGGCCCGTGCAGGTTGAACGCCGATCCCTCTGCCGCGGGGAGAGCGGATGCCTCGGTGACTGCAACCTCTGGTATGCGAGGAGGAGTTTTCCCAACACGCTCCTTCATGGACTCCCTCTGCTCCCTGCGGAGGCTTCCTCGGTTTCCCATCTCCCCTGAGTGGCTGTCCGCCTCTTCCACTACACAGACGGACTCATGACGCCGACTCCTGTCGTCGGTTTCGTCCGGGGAAATGGTTTTAGCAGTGGAGAAAGCATGCGGAACCCTCACCTGGCTGTCGCTTCCGTAACCTGAGCCAGtGCTTCGACCTAGAGAGAGCCTTCTACTACTCTATTGTGACCAGCCCAGGAAaaggagaacacacacagacagtagttGCATTACCAGGACTCACCCATgcaacaaacacagctgctgcCTGTCACCCACCTTTTTGTGTCCTCCAATAAGCTGGGACTTTGACCCTAGAGACACCCTGAGCTACGTGTGCACCAAATGTTGTGTCaagtgaaaactttgacctgTTGGGACCTGCCATCCGCAGAGCCACTGCGGATGGCATTCAGTTGTTTGAATATGGTGAAAGAATTCCCTTACTCTCCAAGTATAACACTTGGTTAAAACAAGCCAAACACTACAATATTTCTAACTTCCAGACAAAAGTCCAAGAAATAAAAGTGGACACACTAggtgccagcagcagcagcagccattatACAACTCAGTAATCCAATCCAATGTTCCTTAAAAAAATGGCATCAAAGTGAGATCGATCAggtgatcctggatagcaaaacatgggatttccaaatccagATCAGTTTGATCcagatgactttttttttttgttgaaaaagtggGCCCAGGATACCAAAAACGCTAAAATACTTAAATAAGGTTGTTCGGAACACAACAATTACGCTCACAAAACAAGGAGGGTTTGATGGAGAACAGATGAATTaagatgaaaaaataaataaataaatgccagCCCCCTTCACGTCAATCTAACGTGTCCTCTCATATATTTACATCCACATCTACGTGGTTGACTCAGTGTTCAGCACTTTTACTGCAGGAATGTTCTGgtttccttccctcctcccaCAGTCCAGACATGTTGAACAGGTGAAACATTGAATCTAAACAGTCTGTAGCTGTGAAGCCTGTCCGGCTTCACTTCTCTTCTCCTAAACAGGCTTATAGCTCATTAGCATACAAGTCAAAACGTCATCACAATAtaattacattatgttgtttATTACTGGGATTTCACCTGTGCCTTCCTCTGATTCGGTCCTTCcgcttcatttatttattatcctAGTTGTGCGCAACATATTATCTTGTGCAAAACAAGAATAGACAGGTACAGGTACGGATTTACCTACAGTATGTACCTTTGGAGCCTAATAATTACAGTAAACTAACCAATTATCATCATCTCCAGGAGCCTGGTTGACTGAAACGGTTTTACAGCAGAATGAGGACAAACCCAAAGTTATATTTAGTCCAAAGCATAAAACCTATCTGCTTTATTTTGTCTTGTCAAGTAGTTTTAATCAGCTGTTAATCAGTTAACAGGCTCTGTATATTGACTCTCTATTGATTGATATTCTTCCCAActtcacctttaaaaaaaacaaacactactTGTAACTGTGCCAAACATGTTCTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319121 lncRNA upstream 9621 15666872 ~ 15667356 (+) True G235074
TU319100 lncRNA upstream 62424 15614216 ~ 15614553 (+) True G235056
XR_005638356.1 lncRNA upstream 110414 15563750 ~ 15566563 (+) True LOC120554283
XR_005638342.1 lncRNA upstream 202970 15468814 ~ 15474007 (+) True LOC120554271
XR_005638339.1 lncRNA upstream 476236 15197999 ~ 15200741 (+) True LOC120554269
TU319214 lncRNA downstream 200273 15883763 ~ 15884010 (+) True G235152
XR_005638350.1 lncRNA downstream 441971 16125461 ~ 16126641 (+) True LOC120554276
TU319242 lncRNA downstream 442329 16125819 ~ 16126791 (+) False LOC120554276
TU319250 lncRNA downstream 512072 16195562 ~ 16195700 (+) True G235185
TU319285 lncRNA downstream 537930 16221420 ~ 16222735 (+) True G235216
XM_039792947.1 mRNA upstream 11340 15660295 ~ 15665637 (+) True LOC120554210
XM_039793049.1 mRNA upstream 218317 15456557 ~ 15458660 (+) True LOC120554262
XM_039793042.1 mRNA upstream 220840 15450271 ~ 15456137 (+) True LOC120554259
XM_039792542.1 mRNA upstream 304128 15334240 ~ 15372849 (+) True LOC120553993
XM_039792541.1 mRNA upstream 391792 15284502 ~ 15285185 (+) True LOC120553992
XM_039793002.1 mRNA downstream 25040 15708530 ~ 15856139 (+) False LOC120554235
XM_039793004.1 mRNA downstream 25040 15708530 ~ 15725044 (+) True LOC120554235
XM_039793005.1 mRNA downstream 25040 15708530 ~ 15725044 (+) False LOC120554235
XM_039793006.1 mRNA downstream 25234 15708724 ~ 15725044 (+) False LOC120554235
XM_039793001.1 mRNA downstream 157844 15841334 ~ 15856139 (+) False LOC120554235
TU318854 other upstream 766902 14806544 ~ 14910075 (+) False LOC120554715
TU318853 other upstream 838886 14806544 ~ 14838091 (+) True LOC120554715
TU318609 other upstream 1532107 14115859 ~ 14144870 (+) True G234651
TU318348 other upstream 2651457 13002963 ~ 13025520 (+) False G234425
unassigned_transcript_1593 other downstream 246804 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 247333 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1595 other downstream 250145 15933635 ~ 15933716 (+) True trnas-uga_26
unassigned_transcript_1596 other downstream 254895 15938385 ~ 15938466 (+) True trnas-uga_27
unassigned_transcript_1597 other downstream 257373 15940863 ~ 15940943 (+) True trnas-uga_28

Expression Profile