RNA id: TU319398


Basic Information

Item Value
RNA id TU319398
length 621
lncRNA type intronic
GC content 0.38
exon number 2
gene id G235284
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16594198 ~ 16594849 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctcatctaaatattcatgaccataccatatttggaagaaaagctcttgttacaaatagggccaaaacacagggatgcataagggccaataaaatatcaactgggccattttcagcccaactaatgttacataccccattaggagaccataaggaacagtgtgaaataccctatataatcattctatcacccctttaatagtTAGCAAACCTCCCGTCATACAGCCTTTGACTTGATTGGACATAGAACACGCCGCAAAGGAGACTCAAGTCTTCTTTTAAATGTTCTCGGTCTGGGCCAGGCCATGTGGCCATCTTTCACCCGCACACATCGTTTTTGTCCTTTAGCTTAGATCTTTTAGATGCCATTAGATGTTGCGTTGTTTACTTTTGCTTTATTAATTTTGGGAATAAACGCTATGGAAAATACATGTTGTCTACCTCTCCTGTGACAAGAGCTCAGAAATCTTTTAACTTTTGCTCGCTATTTAGGGTAACCGCGGGGTCTTATGTCTTAAATTCAATATTCTAAAAATAAGGCcttaaaagtcttacatttcgTTTACAAAGGTCTTCAATTATTTTGTGTCCTTTTGTAGGATTAAATAAATACCgtaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638354.1 lncRNA upstream 28154 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 269950 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 269981 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 371463 16221420 ~ 16222735 (+) True G235216
TU319250 lncRNA upstream 398498 16195562 ~ 16195700 (+) True G235185
TU319436 lncRNA downstream 245337 16840186 ~ 16840829 (+) True G235321
TU319439 lncRNA downstream 285790 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 339950 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 538267 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 588506 17183355 ~ 17204668 (+) True LOC120554285
XM_039792974.1 mRNA upstream 92913 16494132 ~ 16501285 (+) True LOC120554222
XM_039792998.1 mRNA upstream 143278 16388697 ~ 16450920 (+) True LOC120554234
XM_039792999.1 mRNA upstream 200186 16388697 ~ 16394012 (+) False LOC120554234
XM_039793000.1 mRNA upstream 200186 16388697 ~ 16394012 (+) False LOC120554234
XM_039793039.1 mRNA upstream 373512 16201422 ~ 16220686 (+) True LOC120554255
XM_039792992.1 mRNA downstream 3995 16598844 ~ 16612671 (+) False LOC120554234
XM_039793010.1 mRNA downstream 48793 16643642 ~ 16658812 (+) False LOC120554238
XM_039793009.1 mRNA downstream 48794 16643643 ~ 16658812 (+) True LOC120554238
XM_039793034.1 mRNA downstream 64954 16659803 ~ 16674690 (+) True LOC120554253
XM_039793033.1 mRNA downstream 64954 16659803 ~ 16674690 (+) False LOC120554253
unassigned_transcript_1668 other upstream 70886 16523239 ~ 16523312 (+) True trnat-agu_52
unassigned_transcript_1667 other upstream 71200 16522926 ~ 16522998 (+) True trnak-cuu_43
unassigned_transcript_1666 other upstream 73803 16520322 ~ 16520395 (+) True trnat-agu_51
unassigned_transcript_1665 other upstream 74128 16519998 ~ 16520070 (+) True trnak-cuu_42
unassigned_transcript_1664 other upstream 75073 16519052 ~ 16519125 (+) True trnat-agu_50
unassigned_transcript_1669 other downstream 27834 16622683 ~ 16622755 (+) True trnak-cuu_44
unassigned_transcript_1670 other downstream 28154 16623003 ~ 16623076 (+) True trnat-agu_53
unassigned_transcript_1671 other downstream 102198 16697047 ~ 16697120 (+) True trnat-agu_54
unassigned_transcript_1672 other downstream 103020 16697869 ~ 16697941 (+) True trnat-cgu_17
unassigned_transcript_1674 other downstream 134769 16729618 ~ 16729690 (+) True trnat-cgu_18

Expression Profile