RNA id: TU319436


Basic Information

Item Value
RNA id TU319436
length 508
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G235321
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16840186 ~ 16840829 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGATTTTGGCAGAGAGTGCAGCCAGTAATGAAGGGATAGATGCACCTAGCACTGTAGATTTTGAAGAGACAGAgggcttctctctacaggatcCTGGACCATTAGTGCTTCATCGTGGGTCACAGTGCAACATCAGATGTCTGCAATGCTCATCAGttttccttggactagggtggcccctaaatcatggctgcagctgtcgccgtggtcctgctacaccctgctacgccgtgcagttccctgctacgtcctgtaacgccctgctacgccatgaactactgcaactactatttatagtcgtagttcaattatctttattgtgactattattgccactgttcatcacacccccaaccgacaccatcagacaccgcctaccaagagcctgggtctgtcccaggtttcttcctgagggaggttttcctcgccactgtcacactgaatgcttgctcttgggggaattactagaattgttgggtccctgtaaattatagtgtggtctagac

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319398 lncRNA upstream 245337 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 274142 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 515938 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 515969 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 617451 16221420 ~ 16222735 (+) True G235216
TU319439 lncRNA downstream 39810 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 93970 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 292287 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 342526 17183355 ~ 17204668 (+) True LOC120554285
TU319642 lncRNA downstream 472180 17313009 ~ 17313865 (+) True G235497
XM_039793185.1 mRNA upstream 57950 16780004 ~ 16782236 (+) True LOC120554340
XM_039793014.1 mRNA upstream 88670 16734661 ~ 16751516 (+) True LOC120554241
XM_039793013.1 mRNA upstream 88670 16739032 ~ 16751516 (+) False LOC120554241
XM_039793015.1 mRNA upstream 156675 16681028 ~ 16683511 (+) True LOC120554242
XM_039793034.1 mRNA upstream 165496 16659803 ~ 16674690 (+) True LOC120554253
XM_039793018.1 mRNA downstream 77133 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA downstream 77133 16917962 ~ 16932606 (+) False LOC120554243
XM_039793017.1 mRNA downstream 77134 16917963 ~ 16932606 (+) True LOC120554243
XM_039792940.1 mRNA downstream 140208 16981037 ~ 17000130 (+) True LOC120554204
XM_039793007.1 mRNA downstream 216859 17057688 ~ 17099481 (+) True LOC120554236
unassigned_transcript_1683 other upstream 21509 16818604 ~ 16818677 (+) True trnat-agu_59
unassigned_transcript_1682 other upstream 54105 16786008 ~ 16786081 (+) True trnat-agu_58
unassigned_transcript_1681 other upstream 54700 16785414 ~ 16785486 (+) True trnat-ugu_44
unassigned_transcript_1680 other upstream 55275 16784838 ~ 16784911 (+) True trnat-agu_57
unassigned_transcript_1679 other upstream 77578 16762536 ~ 16762608 (+) True trnat-cgu_21
unassigned_transcript_1691 other downstream 109592 16950421 ~ 16950494 (+) True trnat-agu_63
unassigned_transcript_1692 other downstream 110868 16951697 ~ 16951769 (+) True trnat-cgu_25
unassigned_transcript_1693 other downstream 188160 17028989 ~ 17029062 (+) True trnat-agu_64
unassigned_transcript_1694 other downstream 188543 17029372 ~ 17029444 (+) True trnat-cgu_26
unassigned_transcript_1695 other downstream 211705 17052534 ~ 17052606 (+) True trnat-ugu_46

Expression Profile