RNA id: TU319439


Basic Information

Item Value
RNA id TU319439
length 352
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC120554243
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16880639 ~ 16932606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataaataaataaataaataaacccACAAATGTTGAACAGGTGGTTGCCAAAAGGGGAAACCAGAGTCCACAAGACTGTTGCCAATTGACTCAAGGGTAACCTTTACAATCCAGCCCTGACATTTAAATGCGCTTTGCCGTTAAATACATGCTTTATTTGAATCCAGTATGTCCAAATCTTAATGCTGAATAAACGACTTCCTCTTGTGTGCACTTCCCTTTTTGAAAGTCTTCACATGTATTGATTTCTGTATCCTGTGGTAGTGTCTCCCTTTGATATCTGTGTCCCACTTCCTCTGCCACGAATCAACACTGTGCGCGCAGCAGGTCTCCTAACTCGTGTTGAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319436 lncRNA upstream 39810 16840186 ~ 16840829 (+) True G235321
TU319398 lncRNA upstream 285790 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 314595 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 556391 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 556422 16322841 ~ 16324217 (+) False G235243
TU319447 lncRNA downstream 2215 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 200532 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 250771 17183355 ~ 17204668 (+) True LOC120554285
TU319642 lncRNA downstream 380425 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 412881 17345465 ~ 17345923 (+) True G235501
XM_039793185.1 mRNA upstream 98403 16780004 ~ 16782236 (+) True LOC120554340
XM_039793014.1 mRNA upstream 129123 16734661 ~ 16751516 (+) True LOC120554241
XM_039793013.1 mRNA upstream 129123 16739032 ~ 16751516 (+) False LOC120554241
XM_039793015.1 mRNA upstream 197128 16681028 ~ 16683511 (+) True LOC120554242
XM_039793036.1 mRNA upstream 205949 16659803 ~ 16674690 (+) False LOC120554253
XM_039792940.1 mRNA downstream 48453 16981037 ~ 17000130 (+) True LOC120554204
XM_039793007.1 mRNA downstream 125104 17057688 ~ 17099481 (+) True LOC120554236
XM_039793038.1 mRNA downstream 180832 17113416 ~ 17124906 (+) True LOC120554254
XM_039792548.1 mRNA downstream 236801 17169385 ~ 17178813 (+) True LOC120553999
XM_039792949.1 mRNA downstream 288725 17221309 ~ 17268297 (+) False LOC120554211
unassigned_transcript_1683 other upstream 61962 16818604 ~ 16818677 (+) True trnat-agu_59
unassigned_transcript_1682 other upstream 94558 16786008 ~ 16786081 (+) True trnat-agu_58
unassigned_transcript_1681 other upstream 95153 16785414 ~ 16785486 (+) True trnat-ugu_44
unassigned_transcript_1680 other upstream 95728 16784838 ~ 16784911 (+) True trnat-agu_57
unassigned_transcript_1679 other upstream 118031 16762536 ~ 16762608 (+) True trnat-cgu_21
unassigned_transcript_1691 other downstream 17837 16950421 ~ 16950494 (+) True trnat-agu_63
unassigned_transcript_1692 other downstream 19113 16951697 ~ 16951769 (+) True trnat-cgu_25
unassigned_transcript_1693 other downstream 96405 17028989 ~ 17029062 (+) True trnat-agu_64
unassigned_transcript_1694 other downstream 96788 17029372 ~ 17029444 (+) True trnat-cgu_26
unassigned_transcript_1695 other downstream 119950 17052534 ~ 17052606 (+) True trnat-ugu_46

Expression Profile