RNA id: XM_039793017.1


Basic Information

Item Value
RNA id XM_039793017.1
length 4059
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120554243
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16880639 ~ 16932606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacagaagaagaagaagaacactaCCGGAATtctacaagaagaagaagacgactACCGTTCATATGTCACCGACCTAAACACCGGAGCAGTCAGCGGAGAGGAGACGTTAGCCGGGTCCAAACAACGGCAGAAACCTCCCCCGAGCAGTATTAGTCTGCTGCTCAGACATGGACCGACACCGGAAACAGCTGGAGGAGGTTTTAAAACCGGAGACGAAGCCGCGAGGAgaagctTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACCCAAAGCCCCCCCACattaaagaagaacaggaggaACTTCGGATCAGTCAGGACgaagagcagcttcaagggccggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaggATGATGAAGATAAACATCAGTTCTCACAGCGTACTCGGAGGCAAACTGAAcagatggaaacagaagctgatggagaggactctgaaggaccagaaccagccatgAACTCCGATCCAGATACACATTCACAACCAGATACTGATGACGAgcctggagactcttctgaacctgagattGATACCAGTGCTGATTGGAAAGAGACCGGAGAACCTCCGTCAGGTTTGAACGCTATGAATAATGATGAAGTCCTTGTCAGTGATTCAAGATGTACTACTGGTGAGAAAGAGCATGAGAAAAGATTTGGCACCAGTGGACATGGAAAGAGACCATTTAGCTGCTCCgtctgtaagaaagcttttaaACAGAGTGgacatttacagaaacacatgagaacccacacaggagagaagccatttagctgctcagtctgtgaGAAAGCGTTTACACTGAGCGAATATTTACAggcacacatgagaatccacacaggagaaaagcaGTTTAGCTGCTCGgtctgtaagaaagcttttacagTGAGTGGAAATTTACGGGcccacatgagaatccacacaggcgAGAAACCGTTTAGCTGCGCATTCTGTGAGAAGGCTTTCACAGAGAGTGGGCATTTACAggcacacatgagaatccacaccggagagaaaccatttagctgctccgTCTGTCAGAAATCTTTTAGAGTGAGTGGAAGTTTACGGATACACATGAgggtccacacaggagagagaccaTTTAGCTGCTCCATCTGTATGAAATCTTTTACAGTGAGTGGAAGcttacagaaacacatgagaacacacacaggagagagaccatttagctgctcacTCTGTAAGAAAGCTTTCACAGAGAGAGGACATTTACAGCAACACATGAGAACCCACATAAGAGATACCATTTAGCTGTGTGAAGTGGAGCTCTAGTCTGGAAGGAGAGCATAGAACCTCAGTCAGGTTTAAACACtctaaaaatgaatgaaatttcTTAAGGTTATATGACATGTAATACTCTGTGGGtcctttttaaaagtctgaaaTCCGATAATTAGAATTGTAggctttaaaatgtcttaagTATGATTTTGAtaggtcaaaaaaaaaaaaatgtattggacTATGAAGTTAATGTAACTGTTGATATCCATGGAATGCCAAAGATTACCTTGTTCATTTTTGCAACAAACAGCTAATCCATGCAACCCCAGCCCTCTTCAAAATTGCAGTCCCAACTCAGTCTCCCTTACGTGTGAAGTGCTGTGACAACACCATCTCTATAAAAGCAACAACTGCTATTAGTCTTGGCTCCATCTCTACTCCAGAAGGAGAATAAACAACTTCATTGCATCTCTTAGCAGGGGTCCAGATCATCTCTACTGAAAGTAGCCCAACACAGAAACTCTTCTCTAGCAGATGATGCGAGTGCCTGCTTGGCGTAAACCAGTTAGCATCCCCAACATGGACAACATCTACCAGCTAACCTGAAGAAAGATTGGGATGCAGCCCAACATTGACTGCGTCATTTGACCTCCAAGTCTGGCTTTCACcggaccaagctcaatcttctAAGATTAAACATTAGTCTggggggagtctgctctgtattttctactgcacaagatcAACGGGAATAGTTCAAATGATTCTGTACGCagttggatagtccttcaaccaatcacaccaacgatccgggtgacgttaacggcgacagcggcatcaacgtgCGGCTGCGCTTCGGTGCCCGCCGtgctgaatgtaaacaaaaaagctgcttggtcgcttctccaTCGTCATTGTGGTAAACCCGCCAATAATAGCGCagcaggtggataagccagtttgtgattggtcccccgCAGATTAGTaatggaagcaggatagataattGTACATGTTTCCAGTCTGAGCACCAGGGTGAAATCAAATCACTGGcggatcgggctgggtttacccggTCTATTCACCCAGCCCGGCTTCCCCACAATGATGGAGCTGCCAGCGAACAGAGGAGTTCTTTCTGTGGTAATGGGACCAACTGGGCTAGCAGTAGAATAGCAACAGCGGCTAAGCAAAGCTGTCAACTGTTTACCTTCTGTTAATGTACAtgtattgatttgatttaatgcCATccaggcctactgtatattgtttgtttgttttagtcaAGTTATTGGGTAGCCAAACTGCTAAGTTGTTAGTTTAGGCTTCACACCGACACTCTTGCACCTCCTCTTTGTGTCTCTCACACAAGTACtccttgtgtgtctgtttttaattCTATTTTACAACTGTCAGCTGGTCGAAATGGCAGCGTCGGAGGCTCAACGGGCGCCCACAGGCCCGCGGCAACGGTACGTGGACGAGCGGGGTAGTGCACTAGCTACTGAAGAGAGCCAAGTggcattaaaacaaagcagagaaTCAAAGATTCTGCAACTGTATCGAGCATCTCATTATCACCAGCCATATCcccattcatatttagacgcaacaaatgCTATATATCCATCTACAAAATAACCGGAAAAGTCAAACgttagacagaagtacaaagagttaATAGCTTTATCAATAATTGTTGATCATTTGGCAGAATAAATTATCTTTGTTGGAGAAACGCTCAATCTTGTGTCAAATTTCACTATGGTTCTTGGGTTATACTGTATGCAAGCCAAACTACACAGCGAAATGACACTGATTAAACCAATCTACAGTGCAGTCACAGTAATTAGTGTAATTAAAtggcattctttggacaactTGTATAGAGAGAGGAATTAGAGTATGCTATTACTTTATCACACCTTTACATGAGCAGACAGACGGCATTTAAGTCATTGCTTACAGAAGAACTCATCAGGAGCAAAGTCTGGCCTAAGTAAATTCCCCCCCCATACAGCTTTGATGCGTCTAAAAGCCAACATTACAGTCGTCACTTTTGTTgaacagagtagaaatggaagaagaggatatgtcCCCCCGTCTTAAaatcctagtgacgtccctgTGTACAACTAAAACCAGACGCACACATCCTTTTCGTCCTTTAGCTTAGATCTTTTagttaagatgttttttttaatttattttttactttttcttttattcattttgggAATAAATGTTCTGGAATATACATGTTGTCTATGTAACTTAGAACAAAAGGGAATTCTGCCTAACAAGtactctgaagaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatataaaaacccACAAATGTTGAACAGGTGGTTGCCAAAAGGGGAAACCAGAGTCCACAAGACTGTTGCCAATTGACTCAAGGGTAACCTTTACAATCCAGCCCTGACATTTAAATGCGCTTTGCCGTTAAATACATGCTTTATTTGAATCCAGTATGTCCAAATCTTAATGCTGAATAAACGACTTCCTCTTGTGTGCACTTCCCTTTTTGAAAGTCTTCACATGTATTGATTTCTGTATCCTGTGGTAGTGTCTCCCTTTGATATCTGTGTCCCACTTCCTCTGCCACGAATCAACACTGTGCGCGCAGCAGGTCTCCTAACTCGTGTTGAATTAAACTTATTGCATTTCCAAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319436 lncRNA upstream 77134 16840186 ~ 16840829 (+) True G235321
TU319398 lncRNA upstream 323114 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 351919 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 593715 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 593746 16322841 ~ 16324217 (+) False G235243
TU319447 lncRNA downstream 2193 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 200510 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 250749 17183355 ~ 17204668 (+) True LOC120554285
TU319642 lncRNA downstream 380403 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 412859 17345465 ~ 17345923 (+) True G235501
XM_039793185.1 mRNA upstream 135727 16780004 ~ 16782236 (+) True LOC120554340
XM_039793014.1 mRNA upstream 166447 16734661 ~ 16751516 (+) True LOC120554241
XM_039793013.1 mRNA upstream 166447 16739032 ~ 16751516 (+) False LOC120554241
XM_039793015.1 mRNA upstream 234452 16681028 ~ 16683511 (+) True LOC120554242
XM_039793036.1 mRNA upstream 243273 16659803 ~ 16674690 (+) False LOC120554253
XM_039792940.1 mRNA downstream 48431 16981037 ~ 17000130 (+) True LOC120554204
XM_039793007.1 mRNA downstream 125082 17057688 ~ 17099481 (+) True LOC120554236
XM_039793038.1 mRNA downstream 180810 17113416 ~ 17124906 (+) True LOC120554254
XM_039792548.1 mRNA downstream 236779 17169385 ~ 17178813 (+) True LOC120553999
XM_039792949.1 mRNA downstream 288703 17221309 ~ 17268297 (+) False LOC120554211
unassigned_transcript_1683 other upstream 99286 16818604 ~ 16818677 (+) True trnat-agu_59
unassigned_transcript_1682 other upstream 131882 16786008 ~ 16786081 (+) True trnat-agu_58
unassigned_transcript_1681 other upstream 132477 16785414 ~ 16785486 (+) True trnat-ugu_44
unassigned_transcript_1680 other upstream 133052 16784838 ~ 16784911 (+) True trnat-agu_57
unassigned_transcript_1679 other upstream 155355 16762536 ~ 16762608 (+) True trnat-cgu_21
unassigned_transcript_1691 other downstream 17815 16950421 ~ 16950494 (+) True trnat-agu_63
unassigned_transcript_1692 other downstream 19091 16951697 ~ 16951769 (+) True trnat-cgu_25
unassigned_transcript_1693 other downstream 96383 17028989 ~ 17029062 (+) True trnat-agu_64
unassigned_transcript_1694 other downstream 96766 17029372 ~ 17029444 (+) True trnat-cgu_26
unassigned_transcript_1695 other downstream 119928 17052534 ~ 17052606 (+) True trnat-ugu_46

Expression Profile