RNA id: TU319479


Basic Information

Item Value
RNA id TU319479
length 1690
lncRNA type intronic
GC content 0.40
exon number 2
gene id G235357
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16681727 ~ 16711192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGTTTcccaattttattttttcctcatgACCGCACGCCGGAGATACGGCACGGTGCCGGAATACTTTAAGCCCTGTGATCTTTATTCATAGAGCACTTCAAAATCCATGCTACAAAGTGttttacaaaacagaaaaataacacGACATGACAGAGCAGTCATAAAAACATCaagattaaaaaatatatatatctaaagACTATTTGGTGTTTAAAACCCTGTACAATGTAAGGAAGTGTAtgtagtaaaacaaaaaaaaaaaaaaaaaagacagttcaAATACATTTAGACTTTATGGACTGACGCCTGATTAAAACACGACATTTTAATAAGTTGGCTGTAAATGTTTTAAACTCGGTCGAGAGTTTTTGAATGAGATCTTGAGTGTAACATTTCGTAGACTCGCTCAATTATTTCATTATCTATTACTATTTATACATCTGTATTTATAGTACAATATCCAAATATCATGAATTTAGTTCCAAATATCATCTTGGTTGTGTGCCACACCTCTCAGACCTcaatcccccccccaaaaaaaataaacacactggTGCACAGCTGCTTCAGTCTTCCTTAAGTACAGGGGACGGAGCCAACCACTAACGATCAAATCAGGATTACCTGAGCAGTGCAGACAGGGAGAAGCAAAACAAGGGGGGAGCTTGTAACACTCACGTGTTGGGTTCTCATGTGGGTCTTTAAATTTCCACTCTctgtaaaagctttcttacagactgagcagctaaatggtttctctcctgaATGATATCGCATGTGTCTCTTTAAACTTTCGTTCACTGTAAAGGCTTTCTTACAGattgagcagctaaatggtttctctcctgtgtggattatCATGTGTCTCTCTAAATGTCCTCTCACCgtaaaagctttcttacagactgagcagctaaatggtttctctcccgtgtggattctcatgtgtgccTTTAAACTTCCACTCGCTGTAAAAGTATTCTGACAGacagagcagctaaatggtttctctcctgtatgAGATCTCATGTGTCTCTTAAGACTTGTCTTCCAGAcaaatcttttcccacactcagagcagctaaatgCTTTCTCATCAGTAGTACATGTTGAATCACTACCAGGGAATGTATCAttattcagagagtttaaacctgactgaggttctctggtctccttccaatcagtctcaggttcagaagagtctccagtctcgCCATCAGTGTCTGGTTGTAAATGTGTATCTGGATCTGATTTcatggctggttctggtcctccacagtcctctccatcagcttctgtttttaactcttcagtttgtctttgatgaagctgtgagaacataggtttctcttcatcatcttcactcttcacagggacaggagtgaatgtgaacttggtgatatcagcctcctccagcccttgaagctgctcttcATCCTGACTGATCCGGAACtcctcctgttcttctttaatGTGGGGGGGCTTTGTGTCCTCCTGGTCCATACTGGAGCTCCACTCCTGCTGATGTTCTTCACCAACAATCACTTTCTGGACATCTGAAGGTAAAGGTGaaacacaaactaacagctaTTAATGTGAATGTTAACAATAATTTGATACATAGCTCTATTCACTCTCATAATAAATAGGGGTGTCAGTATTTTCAATTCAATCTTCgatttaca

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319516 lncRNA downstream 68016 16611983 ~ 16613711 (-) True G235387
XR_005638345.1 lncRNA downstream 114636 16562804 ~ 16567091 (-) False LOC120554273
XR_005638344.1 lncRNA downstream 114711 16562804 ~ 16567016 (-) True LOC120554273
TU319509 lncRNA downstream 114712 16562814 ~ 16567015 (-) False LOC120554273
XR_005638360.1 lncRNA downstream 175096 16505591 ~ 16506631 (-) True LOC120554287
TU319545 lncRNA upstream 55474 16766666 ~ 16775545 (-) True G235413
TU319560 lncRNA upstream 162643 16873835 ~ 16876854 (-) True G235427
TU319562 lncRNA upstream 164817 16876009 ~ 16916150 (-) False LOC120554268
XR_005638338.1 lncRNA upstream 202406 16913598 ~ 16916699 (-) True LOC120554268
TU319609 lncRNA upstream 464430 17175622 ~ 17175960 (-) True G235471
XM_039792942.1 mRNA downstream 43532 16616703 ~ 16638195 (-) True LOC120554206
XM_039792978.1 mRNA downstream 125272 16531962 ~ 16556455 (-) False LOC120554223
XM_039792976.1 mRNA downstream 125272 16531962 ~ 16556455 (-) False LOC120554223
XM_039792975.1 mRNA downstream 125272 16531962 ~ 16556455 (-) True LOC120554223
XM_039792957.1 mRNA downstream 249295 16410760 ~ 16432432 (-) False LOC120554212
XM_039793051.1 mRNA upstream 24994 16736186 ~ 16742288 (-) False LOC120554263
XM_039793050.1 mRNA upstream 28477 16739669 ~ 16742288 (-) False LOC120554263
XM_039792952.1 mRNA upstream 113465 16824657 ~ 16854133 (-) True LOC120554212
XM_039792547.1 mRNA upstream 174117 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 305012 17016204 ~ 17026731 (-) True LOC120554233
TU319517 other downstream 65411 16611983 ~ 16616316 (-) False G235387
unassigned_transcript_1647 other downstream 176797 16504858 ~ 16504930 (-) True trnat-cgu_16
unassigned_transcript_1645 other downstream 181197 16500458 ~ 16500530 (-) True trnam-cau_66
unassigned_transcript_1644 other downstream 225266 16456388 ~ 16456461 (-) True trnat-agu_41
unassigned_transcript_1643 other downstream 294882 16386772 ~ 16386845 (-) True trnat-agu_40
unassigned_transcript_1673 other upstream 17242 16728434 ~ 16728507 (-) True trnat-agu_55
XR_005638337.1 other upstream 24994 16736186 ~ 16742288 (-) True LOC120554263
unassigned_transcript_1675 other upstream 44801 16755993 ~ 16756065 (-) True trnat-cgu_19
unassigned_transcript_1684 other upstream 152685 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1685 other upstream 153241 16864433 ~ 16864506 (-) True trnat-agu_60

Expression Profile