RNA id: TU319560


Basic Information

Item Value
RNA id TU319560
length 247
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G235427
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16873835 ~ 16876854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atttaagcatcgtaaaacacactacattaaaagtcgaaagaaacaaaataaaactataaaaagccgtttttggtcttctctacacttttcccaccatcacaactctagtgttgGTTGAAATGAAAACATAGtttaccgatttacatgtgaaaatatatgttgTCTCTATGCTCgctaaaagtactattttttaaatggagtctggtgtgtttagcgctagctacttcatagctgtttctggtaaaca

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319545 lncRNA downstream 98290 16766666 ~ 16775545 (-) True G235413
TU319479 lncRNA downstream 162643 16681727 ~ 16711192 (-) True G235357
TU319516 lncRNA downstream 260124 16611983 ~ 16613711 (-) True G235387
XR_005638345.1 lncRNA downstream 306744 16562804 ~ 16567091 (-) False LOC120554273
XR_005638338.1 lncRNA upstream 36744 16913598 ~ 16916699 (-) True LOC120554268
TU319609 lncRNA upstream 298768 17175622 ~ 17175960 (-) True G235471
TU319657 lncRNA upstream 389406 17266260 ~ 17330177 (-) True G235512
TU319689 lncRNA upstream 488346 17365200 ~ 17365435 (-) True G235542
TU319728 lncRNA upstream 535132 17411986 ~ 17413880 (-) True G235571
XM_039792956.1 mRNA downstream 19700 16410760 ~ 16854135 (-) False LOC120554212
XM_039792952.1 mRNA downstream 19702 16824657 ~ 16854133 (-) True LOC120554212
XM_039793051.1 mRNA downstream 131547 16736186 ~ 16742288 (-) False LOC120554263
XM_039793050.1 mRNA downstream 131547 16739669 ~ 16742288 (-) False LOC120554263
XM_039792942.1 mRNA downstream 235640 16616703 ~ 16638195 (-) True LOC120554206
XM_039792547.1 mRNA upstream 8455 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 139350 17016204 ~ 17026731 (-) True LOC120554233
XM_039792990.1 mRNA upstream 267117 17143971 ~ 17160195 (-) True LOC120554231
XM_039792941.1 mRNA upstream 308533 17185387 ~ 17208313 (-) True LOC120554205
XM_039792979.1 mRNA upstream 341337 17218191 ~ 17234702 (-) True LOC120554225
unassigned_transcript_1687 other downstream 721 16873041 ~ 16873114 (-) True trnat-agu_61
unassigned_transcript_1686 other downstream 1907 16871856 ~ 16871928 (-) True trnat-cgu_22
unassigned_transcript_1685 other downstream 9329 16864433 ~ 16864506 (-) True trnat-agu_60
unassigned_transcript_1684 other downstream 9886 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1675 other downstream 117770 16755993 ~ 16756065 (-) True trnat-cgu_19
unassigned_transcript_1688 other upstream 30559 16907413 ~ 16907485 (-) True trnat-cgu_23
unassigned_transcript_1689 other upstream 30896 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1690 other upstream 31491 16908345 ~ 16908418 (-) True trnat-agu_62
TU319472 other upstream 187448 17064302 ~ 17103517 (-) True G235350
TU319844 other upstream 857877 17734731 ~ 17745200 (-) False s100b

Expression Profile