RNA id: TU319695


Basic Information

Item Value
RNA id TU319695
length 231
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G235548
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17382855 ~ 17383085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataagtgataaaaacgccatagtatagcatgtcgaaaaaatttataaaaaaagccatagtatagtttatcgaaaaaagtgataaaaacgccatagtatagcatgtcgaaaacagtgataaaaaagccatagtatagtatgtcgaaaaaagtgataaaaatgccatagtatagtatgttgaaaacagtgataaaaatgccatagtatagtatgtcgaaaactgataaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319694 lncRNA upstream 1655 17380905 ~ 17381200 (+) True G235547
TU319675 lncRNA upstream 32769 17349865 ~ 17350086 (+) True G235530
TU319646 lncRNA upstream 36932 17345465 ~ 17345923 (+) True G235501
TU319642 lncRNA upstream 68990 17313009 ~ 17313865 (+) True G235497
XR_005638358.1 lncRNA upstream 178187 17183355 ~ 17204668 (+) True LOC120554285
TU319702 lncRNA downstream 4546 17387631 ~ 17391423 (+) True G235552
TU319740 lncRNA downstream 108186 17491271 ~ 17494315 (+) True G235578
TU319750 lncRNA downstream 126408 17509493 ~ 17509695 (+) True G235587
TU319752 lncRNA downstream 129641 17512726 ~ 17542161 (+) True G235589
TU319754 lncRNA downstream 158395 17541480 ~ 17846317 (+) True G235591
XM_039793026.1 mRNA upstream 18790 17357447 ~ 17364065 (+) True LOC120554248
XM_039792945.1 mRNA upstream 39826 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 75917 17289184 ~ 17306938 (+) True LOC120554229
XM_039792950.1 mRNA upstream 114558 17236994 ~ 17268297 (+) False LOC120554211
XM_039792951.1 mRNA upstream 120231 17234050 ~ 17262624 (+) False LOC120554211
XM_039792931.1 mRNA downstream 392447 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 452809 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 499380 17882465 ~ 17935473 (+) True als2b
XM_039792924.1 mRNA downstream 499380 17882465 ~ 17935473 (+) False als2b
XM_039792925.1 mRNA downstream 499380 17882465 ~ 17935473 (+) False als2b
unassigned_transcript_1702 other upstream 277642 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 278214 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 308772 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 309130 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 309735 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 570054 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 784201 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 793740 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2613714 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2825244 20208329 ~ 20233795 (+) False prkx

Expression Profile