RNA id: TU319702


Basic Information

Item Value
RNA id TU319702
length 3758
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G235552
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17387631 ~ 17391423 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTaacttttattaaatgtttttatctGTGAATAAATACTTGAACCGCCTGTGACACTTGGCAGCACAAATGTACATAAAGAAGGAATCCGAAGAACACCAAACACGTTACATTCAGACATGTCACATCTACGACAGCCGAGTGGAGCTGCAGGTCGGGACCAGCCAATATTGCTCATTTGACCGTACAATCATTACATTTGTATTGCTAATTGTTCCTTGACATTTTTTGCAATGTTTGTGCTTCTTTTTAATCCGCTTTTGAATAACAAATGCAATCAAACTGAATGAACTGATCCCCAACCTGAGGGATAAAATTACACCGAATGTGAACGGAATTTGGACTGTAGATTGTTAATATCGCAGACATGTTGATTGCCGGGTTCACTTCGTCTGTACAGGGGACAACATACAAAACGGCcaacacgccacacacacacacacacacacacatacaaaaaaacctCTGGAAAAACTAAACCTCTGCGCAACCTTTCAAGTATGACAGATTATCCTGCACATTACAGATACAAACACAATCCATGTGCATTATAAAAGGTCCTTTCAGTTTGTGGAAACCGACTGGCCCGTCCTGAGTCCTCCGCAGGAACACGTGTTTGCATACAAACCATCATCATTCATGTGATACATTACAGAGTCAACACATTTTCTGCACTAAAAGCTTTCATGTGACAAACATATTCAGATTGATAGCAgtacaaataaatgtaaacacCACTGGGTCACAACTGGAGTGTTAAAGcatgaaatgaagaaaaaaaaaaacatgcactcAAACAATTACAAAAGATCAGACATTTTCTGGGAAAATCTcgaaagaaaaaacagaaataaatcaaACTAGCGGTGCGCAACTGGACCCCTAATTAGGagacaactacaactcccagaGAACATTGCTGTAAGAAACAATTAGAGGCTGAGCTTTGTGGAGCTAGCTGTTTACCTGTTAATCAGgagttcatttattttttcatctttttttttttatggctgcGTTATTCAATCAAACTCTacaaaagggttagggttagttttgcacatacattaaaacacatttcaaaatactttgTGATCTCCAGTTGAATTTCTAAAATAAAGTTCTGTGGGTTGAACAATGTTTAGGATGTAAGTATAAAACTTCTATCGTTGGATGTTTACAGTAATACAAGCTGCTGTCAGCGCTGGCAGTGCCATGTATGATACTTTggctgataaaataaaaatgcaataatacagtgtAACAGTGAAAAAGTATATAGCCATTAGATGGCAAAATAAAAAAGCTATTTAAAGctaactttgtttttgttttttcaaccttcctatgtttttgtgtgcaagTATCTAATGGAAACAACAATCTCGGAAATGagtccagtattgagcaagaACGCTGTGACCAACAGCTGCAAACCGGGCTGCCATGTAATCCTATAGGGCAAATACGCATCGTCAAtttccatccactaaaagtgcagtttttgccactgacaggctcagattattattctgtcTGACTACATTAGGGAAAggatccatacagagatagacctttttgttaaagagtaaaatcctCTTTGTTTAACTAGAAACTGCTCTGAAATCACCATTGCTTAACCCACcagaaaacaatacttttagcgtgtatagagccaacatattttttgtgtttatttcaaccaaaacctagagtttgtttgatttttggaaaagtggaaaaactAACCAAATCAgcttttaagttttattttgtgtagcGAACGTAattttgcagatgtttttatgtttaaaaaaaggatcttacgcATTAACAGAGAGgtcaacctccttagaaatcctttccataatgttgtcagacacttttatACTATTAAtcagagtctgtcagcggcaaaacattttttatggacgtaaattaaagctgcacaattgcccaataacttacattgtagcttgatACGCTGACTGCCGACTGCTACTGGACAATGTCGTAGATTGTTGTCCCCATCAGTCCCTTAGACTCAAAGATATGGGAaaataggttgaaaaaaaacaaacaaagtcaCCCTTTAAAGGCTGAATATTTAgcagttttaatttaaatatcaaTCTTAAAGCCAtatttgaaaattgaaataCTGACCTTTTCCTGTTTTTAGTGAAATCTACCTCACGCACCCCGTGATCAAAGCTGTTCGACTACAGAACCACAACTACACACCCGTACGTATTTACACTCATTTATCCTCGTCTCAGGAATATACACACCCACTACATGAATGTACACGCTatcttaaataaatacatatcacACCAACACACCAAAAGTGTTTGGAGGAAGATACATTCCAGCACGTTGGGATGATGAAGTGAGGAAGGTTTTGGAACCAGGGTACGAAACCTCCACATTACATCCGCTACTTCCCGAATTCAGCTTTTCAGAATAATAAAAGGACCATTGAAAAGTAAATAACAGACTTGGACGACTTATTTCCTATAAagctgatgaaaaaaaatacagaaggaGAAATTAAATAACATTTTCCCCACTTTAAGTGCATAcattaatattttacaaaaacaacatcaaatagCATGATAAGGAGCTTTTACACCGAAGGGATGGTGGTTGTTCTGGGTCTAAAGGGACTGTTGAGGGATTATTTTCCCCCCCATACTGTACAGTTTATTGTTTGGGTTGTTAGATGTTCCTAACTGTTTTCTACGTTTGGGTTGTTAAATACAATTTCCATTTAAGACATTTTCCTGTACCACACAGcatagcgtctgtatggaaggCACCTGGCGTTCCATACAGATggcgtagtattaagagagacaatggtagagagtagtatgaaagactcAAAATCTGCATAAGGAGGATGGTTggcaacacaggactttcacccagagcgtcaaaaagtgacgccaaaggtcccgacccagagcgtcaaatagTGACGCCAaaggtcccgacccagagcgtcaaaaatgTGACCCAAAGGTCccaacccagagcgtcaaaaagtgacgccaaaggTCCCGACCAAGAGCGTCAAATAGTGACGCCAaaggtcccgacccagagcgtcaaatagTGACGCCAaaggtcccgacccagagcgtaaAAAATGTGACGCCAaaggtcccgacccagagcgtcaaatagCGACGCCAAAGGTCCCGAcacagagcgtcaaaaagtgacgccaaaggTCCAGACCatgagcgtcaaaaagtgaagccaaaggtcccgacccagagcatcaaaaagtgacgccaaaggAGACTTTTTAAGTAAGCAACTCACGccaaaaggcacctgaccagGCGTTGCTTTTTGACGCTatgggagtgagaacgtgtTGACCAATCCAGCTTCTTTTCTCAGGGCGTTTTCCATCAGAGCATCCCGTCCAGGTTCTTCTCTGCGTTGGTCTTGTCGTCGCCGCTGCTTTCCTGAGGGCTGTACTGGGTGTGGTAATCGCGGAGGATGGTCACCACATCGTGGTGGCCAAAGTGGACTGCCTCATCCATCGGTGTGTTCCCCCACCTGAAGCGAACAAAACAAAGAGGCGGACGAGAGCCACGTTGGTCTGCTGCAACATTCATATGGACAATTAATGCGACTGGAATTCACTGGGTTCAACTAAAAAGAACATATAAATCAGAAACATCCCCATGATTCTGAAACTAGAGTGTATTTTTTATCAATACACCCATTTGTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319695 lncRNA upstream 4546 17382855 ~ 17383085 (+) True G235548
TU319694 lncRNA upstream 6431 17380905 ~ 17381200 (+) True G235547
TU319675 lncRNA upstream 37545 17349865 ~ 17350086 (+) True G235530
TU319646 lncRNA upstream 41708 17345465 ~ 17345923 (+) True G235501
TU319642 lncRNA upstream 73766 17313009 ~ 17313865 (+) True G235497
TU319740 lncRNA downstream 99848 17491271 ~ 17494315 (+) True G235578
TU319750 lncRNA downstream 118070 17509493 ~ 17509695 (+) True G235587
TU319752 lncRNA downstream 121303 17512726 ~ 17542161 (+) True G235589
TU319754 lncRNA downstream 150057 17541480 ~ 17846317 (+) True G235591
TU319780 lncRNA downstream 330673 17722096 ~ 17727093 (+) True G235614
XM_039793026.1 mRNA upstream 23566 17357447 ~ 17364065 (+) True LOC120554248
XM_039792945.1 mRNA upstream 44602 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 80693 17289184 ~ 17306938 (+) True LOC120554229
XM_039792950.1 mRNA upstream 119334 17236994 ~ 17268297 (+) False LOC120554211
XM_039792951.1 mRNA upstream 125007 17234050 ~ 17262624 (+) False LOC120554211
XM_039792931.1 mRNA downstream 384109 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 444471 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 491042 17882465 ~ 17935473 (+) True als2b
XM_039792924.1 mRNA downstream 491042 17882465 ~ 17935473 (+) False als2b
XM_039792925.1 mRNA downstream 491042 17882465 ~ 17935473 (+) False als2b
unassigned_transcript_1702 other upstream 282418 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 282990 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 313548 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 313906 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 314511 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 561716 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 775863 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 785402 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2605376 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2816906 20208329 ~ 20233795 (+) False prkx

Expression Profile