RNA id: TU319740


Basic Information

Item Value
RNA id TU319740
length 1946
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G235578
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17491271 ~ 17494315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTCCGGGAAGACAACAGGAAGAAGAACACAGAATACAGGGAATTGTTTGGCATGAAAATGGGAAACAAAGACGGTAAATATAGCTAATTGGCTATTGGCAGCTTCTATACAAAATTATTGGAAGCGGGCTTGAGAAAGACCCAGAGTACGACAGCTCGTTCTGTAGGAGTGGAGCACGGCAAAGGGATCCTCGCTAGACTTCTCACGGTACAAAGTTAGAACAGTAATGACGATTAAGAGGCTTACGGTGGGTTTAAAAGAGGCACATCTTCATCACCGCTCCTCCCGTTAATTATACAAATACATCTCAACCAACAGTCCGTTCCCGTACGGAGTACAAAAGTGGGTTTGGGTTTTTGAAAGAAGTGatcaaaatgtgaaataaaaaggTCAACTTGTTTttcccttctttctttttttcccctgtcaTCTGAGCCGGCGTTTGGAAACAAATTCAACATTGATTAATTCAAGATTTTGCAActactgttctttttttttaaattaaatgattaCATTGGTTCCCAAATCCTAAGGCCACAGACGGTTTGCTGCAGAGCTTGCAGGGAAATGATGCAAGTCGGGCAAAAGAAGCTCAACAATTAAATTCTTTTAGAGGATAACAGAGCAGGGTTTGGGAAGGATTTAACGAGCTAGatgttttaagactttttaacaGCTCAGAGAATATGATTTAATACCCGTTTCACGATCACACCGGCCAAAGTATGTCCCAGTATTTCCCCCGCAGCATACACAGAACACCAATTCCTGCCAGTAAAGTTCCATTTTGGTCTCTGTTCATTAAAATATTATCCCTGTCAACTCATTTGTGTGTCGGGATGATAGAGTGGAAAATTATGGGGTATGTAAAAACCAGCATTTTTATTGTGAATTTATTTGTGTGCAAAGTGATGGTGTAAACAATATGCAATTAGGACCCCgttaaaaatgcattttaatgggTTACGTTTTGTGTCGGCATAAAGTTGACACTTCTTTTAAGAGCTGTTTGTGTTCTTGCGGAATCAAAAATGCTGAATTAAACAACCACATTGTCAAAttgcatcactttttttttttttaaagtagattAAGTTAATAAATAACACTCCACCGGTAGAGGGCAGAAAATAAATAGTGCACAGCGCCGCGAGGTGCGTTAGATTCGACCATAtctgaagggggggggggagaaagccACCTAGCGCACCTCCAACATTCATCCAAACATTCAACCCAAACTCCcctttgcaaaaaaaaacacaatctatTAACAACAAAGTCATGTCTGAGTTGCAGTATTTCCAACTTTTCAAAGCGATTTGTACAATACATGTATATAAATACAGTGTTTTGTCAAGATACTGACTCATTTTTAAGGACGTACTGTGACATGAGCGAAAAGCAGCGTGTGTAAAGGTAAAACTGCTTGGGACTGAacagtcagtgtgtgttttcagctggGAAGGCTGGGTTGTCTTCCCCACCGTCTGAGGACGGGCGTGTTTGGTCTTTGTCCTCGTTAGAGTctgtgggcgctggacgggcgGCATTTATTTGCGTGGGCGCTTCCGTGCCGTCATCACCGGGGTTTCTGTGTGACGTCGCCACCGCCTTGTACTCGGCCGACGCCTGCTCATTAGGTAcctACCTGCAGGGGCTGAGTCTCTGTGGGCGGCGCGCGGCTCTTCACCATGTTCATCATCTCCTTGATCTGGACGATAGCGAAGGCGATGGTGACCCAGGGGGCGCCTGAGAGCACCCAGGCGGGTCTGCTCAcgtcctcctgctcctcctggtGTTTGGTCTTAATGATGGGCAGCGGGGCGGCCAGGCGTGCCGAGGTGGGGCTCCCGGGGACGGTCTGGCTCTGCACCAGGTCGATGGTAGCGATGGGAACCGGGCTGGAGGGAACCGGGATGTTCTCGGCCAGCATTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319702 lncRNA upstream 99848 17387631 ~ 17391423 (+) True G235552
TU319695 lncRNA upstream 108186 17382855 ~ 17383085 (+) True G235548
TU319694 lncRNA upstream 110071 17380905 ~ 17381200 (+) True G235547
TU319675 lncRNA upstream 141185 17349865 ~ 17350086 (+) True G235530
TU319646 lncRNA upstream 145348 17345465 ~ 17345923 (+) True G235501
TU319750 lncRNA downstream 15178 17509493 ~ 17509695 (+) True G235587
TU319752 lncRNA downstream 18411 17512726 ~ 17542161 (+) True G235589
TU319754 lncRNA downstream 47165 17541480 ~ 17846317 (+) True G235591
TU319780 lncRNA downstream 227781 17722096 ~ 17727093 (+) True G235614
TU319786 lncRNA downstream 235154 17729469 ~ 17732780 (+) True G235619
XM_039793026.1 mRNA upstream 127206 17357447 ~ 17364065 (+) True LOC120554248
XM_039792945.1 mRNA upstream 148242 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 184333 17289184 ~ 17306938 (+) True LOC120554229
XM_039792950.1 mRNA upstream 222974 17236994 ~ 17268297 (+) False LOC120554211
XM_039792951.1 mRNA upstream 228647 17234050 ~ 17262624 (+) False LOC120554211
XM_039792931.1 mRNA downstream 281217 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 341579 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 388150 17882465 ~ 17935473 (+) True als2b
XM_039792924.1 mRNA downstream 388150 17882465 ~ 17935473 (+) False als2b
XM_039792925.1 mRNA downstream 388150 17882465 ~ 17935473 (+) False als2b
unassigned_transcript_1702 other upstream 386058 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 386630 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 417188 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 417546 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 418151 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 458824 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 672971 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 682510 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2502484 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2714014 20208329 ~ 20233795 (+) False prkx

Expression Profile