RNA id: TU319752


Basic Information

Item Value
RNA id TU319752
length 494
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G235589
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17512726 ~ 17542161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acgctgcctcctgtttatgcctggtatacgagaatgttgatgagatatgcgctttgggcgtgttagtttaaacagaggttacatcttctactggagctaaaaaaaactaaaaacactcttgtgtgcacggagatcacttttggctcaaaactccgcTTGAAAACCAAAAGgtagcgatgtaaatgtagcctaaacgAGGGAATCAGGTTCcgttttttattgtttacagGAAGTCTGGTGACAAGTTTGTCTGACGTAATATTCAAATAAAGCAGATGGCCAATCCCAGGTCCCATAGAAGGCTGGCTaagcctcccccccccctccatgttAGAGGATGGGACATGGGACAAACTCAGAAAAAAATTCAAAGCACACATTAAATAAATTTATCCCGAAGAtggtttctgacattttaggtagttctgatcacgcttatgttttttttttgtttccccaAGTGCTCATTTTTCTGATCGGTTTGGTTTGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319750 lncRNA upstream 3031 17509493 ~ 17509695 (+) True G235587
TU319740 lncRNA upstream 18411 17491271 ~ 17494315 (+) True G235578
TU319702 lncRNA upstream 121303 17387631 ~ 17391423 (+) True G235552
TU319695 lncRNA upstream 129641 17382855 ~ 17383085 (+) True G235548
TU319694 lncRNA upstream 131526 17380905 ~ 17381200 (+) True G235547
TU319780 lncRNA downstream 179935 17722096 ~ 17727093 (+) True G235614
TU319786 lncRNA downstream 187308 17729469 ~ 17732780 (+) True G235619
TU319775 lncRNA downstream 200631 17742792 ~ 17745153 (+) True G235609
TU319792 lncRNA downstream 273554 17815715 ~ 17828471 (+) True G235625
TU319797 lncRNA downstream 294909 17837070 ~ 17838244 (+) True G235630
XM_039793026.1 mRNA upstream 148661 17357447 ~ 17364065 (+) True LOC120554248
XM_039792945.1 mRNA upstream 169697 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 205788 17289184 ~ 17306938 (+) True LOC120554229
XM_039792950.1 mRNA upstream 244429 17236994 ~ 17268297 (+) False LOC120554211
XM_039792951.1 mRNA upstream 250102 17234050 ~ 17262624 (+) False LOC120554211
XM_039792931.1 mRNA downstream 233371 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 293733 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 340304 17882465 ~ 17935473 (+) True als2b
XM_039792924.1 mRNA downstream 340304 17882465 ~ 17935473 (+) False als2b
XM_039792925.1 mRNA downstream 340304 17882465 ~ 17935473 (+) False als2b
unassigned_transcript_1702 other upstream 407513 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 408085 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 438643 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 439001 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 439606 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 410978 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 625125 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 634664 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2454638 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2666168 20208329 ~ 20233795 (+) False prkx

Expression Profile