RNA id: TU319844


Basic Information

Item Value
RNA id TU319844
length 2845
RNA type TUCP
GC content 0.41
exon number 3
gene id s100b
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17734731 ~ 17745257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCAGTATAAAGTCTGCTGTCCGTCCTCAGCCTCCACCCTCTGGACAACTTCTGCCTGGACTCACACCGAGTGAAAAGGTGAAAAGAAGACAAAGTGGACAATGACAGACCTGGAGACCTCGATGGGCGCCATTATCGCCGTGTTTCAGAAGTATTCGGAAAGAGAAGGAGACAAACACAAGCTGAAGAAGAGCGAGCTCAAGGACCTGCTTCAGGACGAGCTGCCCGAACTGATGGAGCACGTGAAAGACCAGGAGGCGCTCGATAAACTAATGGAGGGCCTGGACACGGACGGCGACTCCGAGTGCGACTTCCAGGAGTTCATGACATTCATCGCCATGGTTACTGTCTTCTGCCACGAGTTCTTCCAGCAAGAGGAcgagtgaaggaggaggaggaggaggaggaggaggaggaggtgaccGTGGAGATAAAAGAGGAGAGCTACAGTAAATTATAAAAGAAGGGGGAAAAGCCTGTAGGTGCCCTGAGAGCACACAACTTCCAGCCAGCAGCCAAAACATTATCGGTGCCGGTTGGCAATAATAATCTACCTTGTTCTCTTTCAGTCTAAATACATAGACGGCTTGTAAAGTCTTCAAAACGGCTTCAGGCTCTGAAGTATGTCACAAAACTAGCCACTGATTTCTAAAAGTAGGTACTtttacaaaaaatgtttgcacGACAGACGCCAGTTGGCTGCAGAAATTGCAACAGGGCCTCCAAAATCATACGACCATATCCATCgttttattcctaccctctaatacagcggcgtcaaactcaatttcgcgtggggccacactggaaaataagaatcccaTCAAGGGCcagcatgcttttatttcatctcaAAGGTCAAGCATCTTTTACTGTATTATATCATGTCTCgtgtagtcttctcacttacagtttggtcaacaTAAAACCACCAAAAGTAAGTTAGCCATCAAGAAAAATAAGCGACAAAAAAGGTCGAAAAAAGCGACAACAACATTGGAAAAAAACGTCGGAAGAGGCGccaaaaagtggaaaaagtagCAAAAGCATGGGcaaaagtgaaaaccatttcagaaaaacagcgacaaaacaatgaaaaagctacaaaaactagggttggccaaaatttattgtgaacctaaattgacaCGCGGGCCTCTCAAAATCTGCaaaggggccagatttggccctcgggccttgagtttgacacgtgtgctcTGATATgacaggagcgtttcataaacTAGCACCCCTAGCAGGTGGCAGAAAATAGGTCCTACAGGATCATATCCAAACCACATATCTAAACCATAGAACGTGTAAAAATACTGGTTTTTAAACGTCGTTATTGTTGTGAAACGGCCACAGTCTGGTCAGGTTGAGGGGGCCAAAAACTATttggaaaaatgtgtcaaaaaaattgtcattaacttttatttttaaacgggacatgaaccccagtctgtgtttgtttgcacCTCGCTCTGTCATCTTACTTCCTGTTTTGCTCCTGTCATCATGACAACAGCTACtggagggcgccgccactataaacgtaaatatgagCCCTAATTGCTTGAACAAAACGACCTATGTGGccgttttttttaagataaaaatgtcagaaattggCCATGTTTCTGCGCTTTTTAATAGACAATTTAGCATAATTCCCAATCCCATTCTATGAATCAAACCATTGACAAATGTTCCCTAGATTTTTGGGTACAGCTACCAACTTTGGATACCGAGTTCTGCAAACCACCGATCAATCATTTTAAGGTTCTTCGGTTGAAAATGGCGTGTAAACTTTTTACAAATGAGTGGTTTGAGTTTGTCTACACTTCACATTATAACCATTTGGAGGTACTTCataaaactgttgtttaaaAAGATTGTGGCTGTTATATTTCAGATGTGGCTAGTAGGTTAGGCAAGCAGCCTCCAATCATCCTAATTCTTTTGAGATTTTACACGTGTTAGGAGGCCAGTAAATCGAGAAAAGGGCTACGATTTTTAAACACTTTGGGAGTCAACCAACTACCGAGAGAGGCACCTGGGTTTGCCTGTTGACTATCAAATATTGAAAGTGACTCGTAAGTTGGTTGTTGGCTagtaaaagttttaaaatggCTTGCGAGATTTAGCTAATCTAGAAGACACTTCGGACGCCACAATTTTACAGTGGATGGAGTAGGAGTTGACCGACGTTTCAGGCACACGTTACAAAATCTAGTTGACTATCGAACATTGGGAATGACTTGTAACTTAGTCTTAAACTTAAAATACGTGTAATTGGCTAGTCAAATGTTAGaaatggcttcttttttttttttttttttatcgctaGCTGCCAGAACACCAACCATAACTTGAAGTTTATTGTCTGTTAGATTTCGGATGTTGCTAGTAAGTTTGTCTATTCCACGTGATTTGTTCAGCTCTTGTTTCTTCTTAAGAAGCTCTCTTTGGAGATGCTTTGTATTTAGGTAGTTGGTAAACAAGTaatttgataacatttatttgaGACGTactacatttaaaatgtctaGCTGGCTGttaaaataatcataaaatGTTTGGATTTAGTAGCCGCTATTGCCTGTAGCCAAGAATCCGACTCAACATTTCACTGCACTCTTCTcgtcatgcaaaaaaaaaaaaaaaacatagcttAGCATAGATGATAGCTATAAAAAAGTGTTTATCAAAAGAGTTGGAACAGAGTTTGTCTGTCGAGATGTATTTTTGAAATGTTGTGCACTGGTTTGTTTGGATGTCGATGAtatgaaattaattaaattatcaATGTGTGACTCTTGTTTTTTTACCCCCTAATGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638357.1 lncRNA downstream 27235 17688970 ~ 17707496 (-) True LOC120554284
TU319802 lncRNA downstream 190295 17512617 ~ 17544436 (-) True G235635
TU319728 lncRNA downstream 320851 17411986 ~ 17413880 (-) True G235571
TU319689 lncRNA downstream 369296 17365200 ~ 17365435 (-) True G235542
TU319657 lncRNA downstream 404554 17266260 ~ 17330177 (-) True G235512
TU319867 lncRNA upstream 105868 17851068 ~ 17851341 (-) True G235688
TU319870 lncRNA upstream 108984 17854184 ~ 17855048 (-) True G235691
TU319874 lncRNA upstream 112866 17858066 ~ 17858278 (-) True G235695
TU319895 lncRNA upstream 137203 17882403 ~ 17882848 (-) True G235715
TU319897 lncRNA upstream 144073 17889273 ~ 17889490 (-) True G235717
XM_039793046.1 mRNA downstream 1791 17718997 ~ 17732940 (-) True LOC120554260
XM_039793047.1 mRNA downstream 1792 17718997 ~ 17732939 (-) False LOC120554260
XM_039793045.1 mRNA downstream 1793 17718997 ~ 17732938 (-) False LOC120554260
XM_039793044.1 mRNA downstream 1800 17718997 ~ 17732931 (-) False LOC120554260
XM_039793043.1 mRNA downstream 1800 17718997 ~ 17732931 (-) False LOC120554260
XM_039792549.1 mRNA upstream 117118 17862318 ~ 17877888 (-) True LOC120554000
XM_039793040.1 mRNA upstream 221524 17966724 ~ 17967809 (-) True LOC120554256
XM_039793055.1 mRNA upstream 222766 17967966 ~ 17969403 (-) True LOC120554266
XM_039793053.1 mRNA upstream 226001 17971201 ~ 17973177 (-) True LOC120554265
XM_039793650.1 mRNA upstream 284636 18029836 ~ 18102031 (-) False LOC120554632
TU319472 other downstream 631214 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 826313 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 826909 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 827246 16907413 ~ 16907485 (-) True trnat-cgu_23
unassigned_transcript_1687 other downstream 861617 16873041 ~ 16873114 (-) True trnat-agu_61
TU320378 other upstream 1986119 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2622141 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2981203 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2981330 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 3015508 20760708 ~ 20760992 (-) True G236349

Expression Profile