RNA id: XM_039792924.1


Basic Information

Item Value
RNA id XM_039792924.1
length 6094
RNA type mRNA
GC content 0.60
exon number 33
gene id als2b
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17882465 ~ 17938311 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCGTCGCCGCTGTGTCAACATTGAGAGAGATGAACAACATCCACAACCAGCGgcgtttaacgttagctgctaacgTTACACAACTTTAACGgacgtgtgtgttttttttctcgccTGCCTGAGTGAACACGTCAAACagtggtgtgtgcgtgtgtgaagcCGGCTTgcctcatctttttttttttactgtaaaattCGGTCAGGAAAACAAGACAGACGGTGTCAATTTGTTTGCATTGACAGCAACATACAAGCTAGCAGGACTGTTTCCCGGTGCTCAGCTAGCTAATGACGTACGTTGGGTTGTGTTCTCcagcggcggcagcagcagcagagactgACGTCCTAATGGAGACATAAACCCTACCGATGGAAACCCAGAGGAAGAGCTCTGGGGATGACGATGGTGGAGAACGAGGCCTGCTCCACACCTGGAGGGGCTACTCCTGCAGTGTCACCCCCGAAAGGCTGCTCCTCCCCGGGCCGGTCCTCCAGGTCGCCCTGGGCACACGGCATGGTGTTCTGCTGGTGGAAGGCGGGCAGGTGTACAGTTTTGGGGAGTTGCCATGGAAGCAGAGTCAAGCGGGCGAGCCTGCCAAGCCCACCCTGGAGAGCGCGCTCAGCGGGCAGCGCGTGGTCGCTGTCGCGGCCGGGAGCTTCCACAGCGGCGCGGTGACGGAGGACGGCGGCGTCCACATGTGGGGCGACAACGGCTCGGGCCAGTGCGGCCTGTCGGGCCTCAGCACCGTCCCAAACCCGACTCCGGTCGCCCTGCTGGACTCTGACGCCGCCAGCCCGCCGCAGACGGCCCCGGTGCTGGAGCTGGCCTGCGGGGCGCAGCACACCCTGGCGCTGTCGGCCCAGCGGGAGGTGTGGGCGTGGGGCAGCGGTGGCCAGCTGGGCCTCGGCGCCGCCGCCTTCCCCGTCTGGAAACCGCAGAAGGTGGAGCACTTGGCGGGAAGGCACGTGCTCCAGGTGGCGTGCGGGGCGTCCCACAGCCTGGCCCTGGTGCGCTGCCTGAGCCCGCAGGACGTCCACCGCCCCCTGGTGGACAAATGCAGACAGTGCAACCAGCTGCTGTTCACCATGACGGACAAAGAAGACCACGTCATCATCTCCGACGGCCACTACTGCCCGCTTGGCGCCGAGCCGGCCGAGGGCGCGCACGGGCTGGAAGCGCCCGCTCCGTCGACGCAAGCCCTAAAAACATCCCCGTCCGAGCCGGTCCTCTGCTTCCACGCCGCCGCCTCCTCAAACTCCCTGGCGCCTGCGGGAGGCGCCGACCCCACTCAGGATTCGGAGAACGAGGCGTCGGCTGCGTCTGACGGCGCACCGCCAGCCTCGGACTCGGACCACTCGGCTCGGTCCGGAGGCGGAGGGGCTTCCGGGGTCAAAGGTTCACCCTATCCGGATGAGCAGGCCGTCAAAGACTATCTGAAGAGGCTGTCGGAGAACACGCAGGCGGATCAGGCAGCGAAGGCGACTCTGCTGACGTCCGAAGGAAGGCTGACCACCGGCTCCACGCTCAACAGCTTAGTGGCGTCCTGTGCCTCCGCCGTGGGCGAGCGGGTCGCCTCCACCTACGAGGCCTTGTCCCTCAAAAGGATGATGAACTTCTACCTTCCATCAGGAGTGGCGAGGGCGGACGGGCCAGCGGCGGTGGCGGCGGGGCTCGCGGGCGTTGCCGGCGATAACACCGCCGAGCGCGTCCGCCAAGAGGACCCCACGCAGGCCAAGAAGAGCTCCAGCACGGGGGACATCCGCGAGGAGGAGGCCGAGGGTCTGCGGCGGCGCCTCTCGCTACCAGGACTCCTCTCTCAGGGTAGATACGCTGTTCACCTCTTATCCTCCTCCTATACCCTGCTGCTGTCCCCGCGGCTGCTGAGGAAAGCCGGTCGTCCGAGGATGCGTGCAGTCGCCCTCACCCCATTGGGAGGGGCGGTCCCCGGGGCCCACGAGGTGTTTCCCACCCTGCAGACGGAGGTGTGGAGCTGGGGCCACGGCGAGCACGGACAGCTGGGACACGGAGACAGTCTGGCCAGATTACAGCCGCTGTGCATCAAGAGTCTGAACAATAAGGAGGTGGTGCGGGTGGCAGCCGGTGCTCATCATTCCCTCGCTCTGACTGCTCAGTCTCAGGTGTTTTCATGGGGAAGTAACAGCTCTGGTCAGCTTGGACACATGGAGTCACCCAGCACTGTCCCCCGCCTCGCAAAGCTGTCAGAGGGGATCCGGGTCTGGGACATAAGCGCTGGAGATAGACACACTCTCCTGCTCGCTGACGGAGACTGCTTCCTTCCGATCATTTACTACAGCGGACAGCAGGTGAAAGAGGGGGTGGATGAGAGCCACGGTCAACAGGAAGAagggaaggaagaggaggagcaagTAGGGGGCTACACCCAGCAGCCTGTACTACTGCCCTTCTGCATGGACCTCGGTTATGTGAGCAACGTGGTTGCGGGCGGCCAGCGGTGCGTGGCGCTCTCGGACAGGAACGTGATGGGCTTCATCGCCAGCCTCCATGAGCTGGCCTCAGCCGAGAGGAAGTTCTACTGCAAGCTGTGTACCATCAAGACACAGATAATacgccccctgctggagctggAGTCTCTGAGTTCGTCCCTCAGCCCAGCGGCCATCGGGCTCCTGCAGACCCTCGCGGGCCGATTCAGCCTCTTGTGTCACCTAACCGGGCAGCACGCCGCCAGCCTCACCGCAAACCTGCGCCGCGTCCGTGACGTCAAAAGCCTGCTCATCCTGGACCACGGCAGCATCTTCCTCGACTCCTACGACGAGTACTGCAGCGCTGTGGGCAACTTCCAGGTGATGGGAGGTTTCCAGACCCTGACCAAACCCTCACtAGATTTCTTTGGGAAGAGTCCCGAGCTGCTGAAAAGGCTGTCGGAGTGCAGCGAGGAGAACCCCACCATGGCCGACCTCCTGGTGGCGCTCTTCTTCCTCCCAACGCGCCACCTTCACGAATACGGCCGGCTGCTGCTCAAACTGGCCACCTGCTTTGAAGTGtgctCCGATGAATACCAGATGCTGCAGGACAGCTGCTCTAAGTTCGAAGCCTTGGCCCTCCAGCTGAAGAGAAAAAGGAAGGATGCTGACTACACCTTTCATTTCTGGAAGAGCTTCCCTGGCAAAATGACGGACTCTCTGCGGAAGCCTCACCGCCGGCTGATCTGTGAGAGCAGCAACAAAGCTCTGACGCTGCAGAACGCCGGGAGGTTCTCCGTCAACTGGTTCATCGTGTTCAACGACGCCTTGGTCCACGCACAGTTCTCCACCCATCACGTCTTCCCCTTGGCCACGCTTTGGGTGGAGCCCATCCCAGAGGAGAACACTAGCCTatATGGGTTAAAGGTGATCACACCAGAGGAGACGTTCAACCTGCTGGCCTCTTCTGCCATGGAGAAGGCCAAGTGGCTTCGCTCCATAAACCAGGCGGTGGAGCAGGCCCTGAGCGGGACGGGGCAGGACACTGCGTCAGTCAGCTCCAGCTCCGGGTCGGGGCAAAAGCTGGAACCCCCCATCTCCAGGACGGCCTCCTACACTTTTTATAAGGACGGGCGGCTGAAAGACGCAACGTACGAAGGACGCTGGCTCGCCGGCAAGCCCAACGGCAGGGGAGTGTTAAAATGGCCTGATGGGAGAATATACACGGGGACCTTCAAGAACGGACTGGAAGATGGtTTCGGTGAATTTGTGGCTCCCAATAAGACACTCAACAAGGCCGATCACTATCAAGGTCACTGGAAAGATGGCAAGATGCACGGCGTCGGGACGTACAGgtacGCCAGCGGTGAGGTGTACGACGGATTCTTCCAGGACAGCATGCGACACGGCCACGGCGTGCTGCGCAGTGGCAAGCTCAACACCTCCTCCCCCAGCGTCTTCATTGGCCAGTGGCTGCAGGACAAGAAGACCGGCTACGGCGTCTTCGATGACATCACAAAAGGGGAGAAGTACATGGGCATGTGGCAGGATCACCTGCGGCAGGGCACCGGGGTGGTCGTCACTCAgtttggcctgtactacgaaggagcCTTCAAAGATAACAAGATGATGGGCACTGGGATCCTCCTGTCGGAGGACGACACCACGTACGAGGGCGAATTCTCGGACGACTGGACTCTCAATGGAAAGGGCGTGCTTACCATGGCCAACGGTGACTACCTGGAGGGCTCCTTCAACGGCGAATGGGGCTCTGGCCTCAAAGTGGCGGGGTCCTACTTCAAACCACACCTTTTTTTGGACACCGACAAAGACAAGACCCACACTGTGAAGCTGGGGCGTCTGTGCGTGCGCGCGGAGGATAAGTGGAAGGCGGTGTTCGAGGAGTGTTGGAGGCAGCTGGGCTGCGAGGAGCCGGGCCGAGGAGAGACCGGGACGGCCTGGGAGAACATCGCCGTGTCCCTCACCACCAGCCGACGGCACATCCaggacagtccGGAGACGTTGTCTCAAAGCCACAGCAGAACCCTGGAGAGCCTGGAGGTCATCCCGCAGCACGTCGGCCTGATCACCATGGAGAGATATCACACCATCCGCCTCTACCTCATCAAGGCGTGTGACACCCCCCTCCACCCACTGGGCCGGCTTTTGGAGACCCTGGTGGCGGTCTACAGGATGACGTACGTTGGAGTCGGAGCCAACCGCCGGCTGCTGCCTCAGGCTGTCAACGAGATCAAGTCGTACCTCAACCGCATCTTCCAGATCGTCAGGTTTCTTTTCCCAGACCTGCCAGAAGAGGGCGGTCTGATTCCAGAGCCGACCACCAACGTCCAGGACAAGAAGGACCCAGGCTCCGACGATGCCCCGCCAGAGTCACCCAAACCTGGTCGCGTGGTGAGCAGCTCGGCTCTGCTGCTTCCGGTCCTGCTTCCCCGCCTCTACCCGCCGCTCTTCACCCTCTACGCTCTGGAAAAGGAGCGAGAGGACGACGTCTACTGGGAGTGCGTCCTCCGCCTCAACAAGCAGCCCGACCTGGCTCTGCTCGCCTTCCTGGGCGTTCAGCAAAAGTTTTGGCCTGTTCCCATTTCCATCCCCATGCCTTCACCTGGGGAGAAGCAGCAGGTCCTCTCCAGCACCAAGGACGTCTGCTTCGCTTCCGCAGTGGAAACGCTACAACAGATCAGcacaACATTCACCCCGTCCGATAAGCTGCAGTTGATCCAGCTCACCTTCGAGGAGATCACCCAGGAGGTGCAGGCGCTGTTGAAGCAGGACTTCCTGTGGTCCATGGACGACCTTTTCCCCGTCTTCCTCTACGTGGTGCTGCGTGCACGaATCAGGAAcctggggtcagaggtcagcctGATCGAAGACCTGATGGACCCCTGTGTGCAGCACGGAGAGCATGGGATCATGTTCACCACACTCAAGGCTTGTTACTACCAGATCCAGCACGAGAAGATCACTTAAGACGAGCTTCGGCCTTAACTCCCCTGCCGTCCCGACCCTACCATCGCAGCCAATcgcaagggggggggggcgacgGTCAGCGAGGGAGGACCGATTTGCGAGCGGCGGCCAACGGGGGAAGCGGAGGAATCGTACCAACAGGTCGCCGATGTCTGCCACCGTCACGGAGATGCGTGTGTCCCCTTCTCTtcgacacacacgcacacaaacacacaatctttcccccccttttttttagtGACCTCTACCAGCTTCTTATCCACTGATCATGAAGGTACACGTGTGAATAATGTCACTGTTATTGTCGACTTCAGACCGTCCAGTGTGAAACTGTCCACAGCTGAAAAGATGGACTTCCTGTGGGAAATTCAGGgttcatttttttgggggggggaggggtggttTTGCTAAcaagttgtttgtttttctggttTATCGTCTCACTGTCAGCACACTGTGAAGTACTGTGAAGAATCCATTTCTTTTAGCatgaaaaacaactttttcgGCAAGGCGATCCATCGCAGAAAACCTTCCTTTTTTTCAGCGTTCAGTTTCCTCTTATGTTTGCTTCTGGACACCTACATGAAGAAAATGGGACATGACAAGGAAATCCTCTCCTAAAAGCACGTCACTTTATTAAAACTgacaaactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319754 lncRNA upstream 36148 17541480 ~ 17846317 (+) True G235591
TU319797 lncRNA upstream 44221 17837070 ~ 17838244 (+) True G235630
TU319792 lncRNA upstream 53994 17815715 ~ 17828471 (+) True G235625
TU319775 lncRNA upstream 137312 17742792 ~ 17745153 (+) True G235609
TU319786 lncRNA upstream 149685 17729469 ~ 17732780 (+) True G235619
TU319878 lncRNA downstream 3621 17939094 ~ 17940272 (+) True G235699
TU319887 lncRNA downstream 7347 17942820 ~ 17943107 (+) True G235707
TU319890 lncRNA downstream 35506 17970979 ~ 17971360 (+) True G235710
TU319891 lncRNA downstream 36660 17972133 ~ 17973526 (+) True G235711
TU319893 lncRNA downstream 41286 17976759 ~ 17977076 (+) True G235713
XM_039793052.1 mRNA upstream 45563 17835894 ~ 17836902 (+) True LOC120554264
XM_039792931.1 mRNA upstream 74712 17775532 ~ 17807753 (+) True LOC120554200
XM_039793026.1 mRNA upstream 518400 17357447 ~ 17364065 (+) True LOC120554248
XM_039792945.1 mRNA upstream 539436 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 575527 17289184 ~ 17306938 (+) True LOC120554229
XM_039792962.1 mRNA downstream 17666 17953139 ~ 17966226 (+) False LOC120554216
XM_039792963.1 mRNA downstream 17666 17953139 ~ 17966019 (+) False LOC120554216
XM_039792550.1 mRNA downstream 253177 18188650 ~ 18238425 (+) True LOC120554001
XM_039792596.1 mRNA downstream 508706 18444179 ~ 18453002 (+) False orc4
XM_039792597.1 mRNA downstream 509341 18444814 ~ 18453002 (+) True orc4
unassigned_transcript_1702 other upstream 777252 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 777824 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 808382 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 808740 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 809345 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 17666 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 231813 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 241352 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2061326 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2272856 20208329 ~ 20233795 (+) False prkx

Expression Profile