RNA id: TU319923


Basic Information

Item Value
RNA id TU319923
length 957
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G235739
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17982872 ~ 17983828 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggccaaggtgttatttgacttttcaacttctctcactacttcaacttatttttacggttttaagctattcatccagtttagctttagcaattcagttattcatgttttattttgcaaactcacacacatgcacacacgcaaacacacacacacacacatatacacacaagcagacacataaacacacacacacacacacaaacatacacacacaaagacacacacagacacacatgcaaacacacacacacaaacacacacacacacacactactcaaaaaaacacacacacacaccccacacacacacacaaacacactccccacacacacacacacacacggatacacacacacacacacacctacacacacacgcacatagccacacacatacacacagaccgacacacacacagacccacgaTCGTGCGatcgttatcagatcaaagagatgtttataaacatgacCCAGGCCCTTAgttaccatgacaaccctttcacagacagtctactgattactccagacttgctgtaggagtcaactaactagactaactatgatcatcaggctaTATCATTTGctttccacttctgtctgtctgtctgtctgtctgtctgtctccttatctgtctgtctccctccctcctgtatccctctctttctctatgccttcCTCccactctttcttttctctgtcttcctccctcctctgttcccctccttccttcctttagtctccctccatctgtctctccctccctctgtctctccctccctccatccttctcaatctctctctccttccatcactccttctctgtctgtctgtctctctctccctcccttcctctccttcactccctctctcccttccttcttctgtctctccctccagggtcatttgtgatttcatccatgtatagagtcattatcagttagaaaatctactcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319893 lncRNA upstream 5796 17976759 ~ 17977076 (+) True G235713
TU319891 lncRNA upstream 9346 17972133 ~ 17973526 (+) True G235711
TU319890 lncRNA upstream 11512 17970979 ~ 17971360 (+) True G235710
TU319887 lncRNA upstream 39765 17942820 ~ 17943107 (+) True G235707
TU319878 lncRNA upstream 42600 17939094 ~ 17940272 (+) True G235699
TU319924 lncRNA downstream 862 17984690 ~ 17984954 (+) True G235740
TU319928 lncRNA downstream 15767 17999595 ~ 17999938 (+) True G235744
TU319930 lncRNA downstream 22503 18006331 ~ 18006763 (+) True G235746
TU319939 lncRNA downstream 82064 18065892 ~ 18112987 (+) True G235754
TU319962 lncRNA downstream 177111 18160939 ~ 18196324 (+) True G235771
XM_039792962.1 mRNA upstream 16646 17953139 ~ 17966226 (+) False LOC120554216
XM_039792963.1 mRNA upstream 16853 17953139 ~ 17966019 (+) False LOC120554216
XM_039792923.1 mRNA upstream 47399 17882465 ~ 17935473 (+) True als2b
XM_039792550.1 mRNA downstream 204822 18188650 ~ 18238425 (+) True LOC120554001
XM_039792596.1 mRNA downstream 460351 18444179 ~ 18453002 (+) False orc4
XM_039792597.1 mRNA downstream 460986 18444814 ~ 18453002 (+) True orc4
XM_039793121.1 mRNA downstream 1040320 19024148 ~ 19127654 (+) False zeb2b
XM_039793123.1 mRNA downstream 1040320 19024148 ~ 19127654 (+) False zeb2b
XR_005638333.1 other upstream 22310 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 877659 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 878231 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 908789 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 909147 17073653 ~ 17073725 (+) True trnat-cgu_28
TU319966 other downstream 183458 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 192997 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2012971 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2224501 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 2399558 20383386 ~ 20397319 (+) False cd99

Expression Profile