RNA id: TU319969


Basic Information

Item Value
RNA id TU319969
length 1426
RNA type TUCP
GC content 0.43
exon number 3
gene id G235778
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18176825 ~ 18181812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCACAAACAGGTACAAATATTGAAATGTCATTGCTTTGCTTTTACTTTTGCATATTAtcacattgttttaattaaataagGACACAAAGTGCAATTTATTTTGTGCCAAACagcttttgttattgttgttgttaatgtTTAGTGccataaatgtttttgtggcaTGCAATGACACATTTTAGGCTATAGCAAACCTCAAAAGATACATATTTAGAATGAAAAACCAAACCACTTCGCTTTCTAGTATGTAAAcatcaaatggaaaaaaatatcacaTTCTTCATTGCAGGTCTGTGTAAAAATGTTGGGGAGAAGGGCGAGAAAGTCATGCTTATAATAATCACAATCATAATATTAACATTCAGAGAGAGATATGGCTTTGATACTGTTCGCTTGAGAAAATCCGTCATCTGTGTTGCTCCAAGAAAAGTACAGAAGGAGGTGCACTtaagttgtttgtgtgtgtgtgtgtgtctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtcggggtcAACAAGTGCACACCCAGAAAAAAAGCCAGGAAAAACCccgagtaactagtaactaaagctggaacagatgaatgtagcggagtgactaaagtaactagtaactaaagctggaacagatgaatgtagtggagtaaaaagtccaatatttctctctgaaatgtagcagagtagaagtagaaagtggcatgaaaagaaaagactctagtaaaagtacaagtacctcaacatttggactcaagtacagtactggagtaaatgtactcagttacattccaccgctgcaGATCAAGCACACAAGTAAGAAGAAGATCAAAATAATTATATTTCATGCCCTTCTCCCCTGGAACATGAACATTGATTTACATGTTAAGATTTTACAGTGAGGAATCTgttgaataaaaatgaaaaagtaacTGCTGCCATGGTAACAGGGGGGTCACATTCTTTGTGGCCTTAGGACTCGGTGGTGGGTCGTATCCAGCTGGCAGGGACCCACTGCGGCTCGTCCTGCGCCTTCCTCGCCGCCGCCAGCAGCTGGACGCAGGAGTCCTGCAGCTCGTCATTGACGATCACATGGTCAAAGAACTGACTTAAGTCGGACTCCATTTTCTGGGCGGCTTCTTCCATCTCCTGGAAGTCTTCATCTTTGAACGGCCGGTTGACGTAGTAGTTGGTGGTGATGTATGAGTCCCGTCGGGTCTCCTTGAGTCGCTCCGGCGGCGGGGGCTTCACGTAGATGATGTAGGCCCGCAGCTCGTGGCTCCGCACCGCCTGGATGGAATTGGGCTCGATGTCGATGACGCAGATCTTCCCGCTGTTTAAAACTTCCCTCACAGACGCAATGCTCGTGCCGTACAGATTCCCTTTGTACTCCCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319939 lncRNA upstream 63838 18065892 ~ 18112987 (+) True G235754
TU319930 lncRNA upstream 170062 18006331 ~ 18006763 (+) True G235746
TU319928 lncRNA upstream 176887 17999595 ~ 17999938 (+) True G235744
TU319924 lncRNA upstream 191871 17984690 ~ 17984954 (+) True G235740
TU319923 lncRNA upstream 192997 17982872 ~ 17983828 (+) True G235739
TU319975 lncRNA downstream 9496 18191308 ~ 18191963 (+) True G235782
TU319981 lncRNA downstream 29732 18211544 ~ 18215021 (+) True G235788
TU320092 lncRNA downstream 175272 18357084 ~ 18360812 (+) True G235869
TU320094 lncRNA downstream 187096 18368908 ~ 18371116 (+) True G235870
TU320096 lncRNA downstream 193353 18375165 ~ 18376385 (+) True G235871
XM_039792962.1 mRNA upstream 210599 17953139 ~ 17966226 (+) False LOC120554216
XM_039792963.1 mRNA upstream 210806 17953139 ~ 17966019 (+) False LOC120554216
XM_039792923.1 mRNA upstream 241352 17882465 ~ 17935473 (+) True als2b
XM_039792550.1 mRNA downstream 6838 18188650 ~ 18238425 (+) True LOC120554001
XM_039792596.1 mRNA downstream 262367 18444179 ~ 18453002 (+) False orc4
XM_039792597.1 mRNA downstream 263002 18444814 ~ 18453002 (+) True orc4
XM_039793121.1 mRNA downstream 842336 19024148 ~ 19127654 (+) False zeb2b
XM_039793123.1 mRNA downstream 842336 19024148 ~ 19127654 (+) False zeb2b
TU319966 other upstream 4871 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 216263 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 1071612 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 1072184 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 1102742 17074011 ~ 17074083 (+) True trnat-cgu_29
TU320432 other downstream 1814987 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2026517 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 2201574 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 2305855 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 2633924 20815736 ~ 20821724 (+) False fmnl2b

Expression Profile