RNA id: TU319975


Basic Information

Item Value
RNA id TU319975
length 517
lncRNA type intronic
GC content 0.41
exon number 2
gene id G235782
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18191308 ~ 18191963 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgaaaaagtggaaattgttaaaaagttcaaagttgacgctaaactgaattgttggctataaaagttgaaaaatgataaaatatgtagaacattgtgaggtctttagctgaagctgaataATAGTTGAAAGCTCTTactgacagaaagaggaaacaagaaagaggacagaaagaggaaagaagaaagaggacagaaagaggaaagagagtgagaggacagaaagaggaaaggggaaagagaacagaggacagaaagaggaaagaggacagaaagaggacaggacagaaagagagcgagaggacagaaagaggaaagaggacaggacagaaagagagcgagaggacagaaagaggaaagagaacagagagcgagaggacagaaagaggaaagaaagaggacagaaagaggaaagagagcgagaggacagaaagaagaaagtggaaagaggaaagaagaaagagaacagaaagaggaaagaggacagaggacagagatgaaagagaacagagagcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319939 lncRNA upstream 78321 18065892 ~ 18112987 (+) True G235754
TU319930 lncRNA upstream 184545 18006331 ~ 18006763 (+) True G235746
TU319928 lncRNA upstream 191370 17999595 ~ 17999938 (+) True G235744
TU319924 lncRNA upstream 206354 17984690 ~ 17984954 (+) True G235740
TU319923 lncRNA upstream 207480 17982872 ~ 17983828 (+) True G235739
TU319981 lncRNA downstream 19581 18211544 ~ 18215021 (+) True G235788
TU320092 lncRNA downstream 165121 18357084 ~ 18360812 (+) True G235869
TU320094 lncRNA downstream 176945 18368908 ~ 18371116 (+) True G235870
TU320096 lncRNA downstream 183202 18375165 ~ 18376385 (+) True G235871
TU320099 lncRNA downstream 198638 18390601 ~ 18466276 (+) True G235874
XM_039792962.1 mRNA upstream 225082 17953139 ~ 17966226 (+) False LOC120554216
XM_039792963.1 mRNA upstream 225289 17953139 ~ 17966019 (+) False LOC120554216
XM_039792923.1 mRNA upstream 255835 17882465 ~ 17935473 (+) True als2b
XM_039792596.1 mRNA downstream 252216 18444179 ~ 18453002 (+) False orc4
XM_039792597.1 mRNA downstream 252851 18444814 ~ 18453002 (+) True orc4
XM_039793121.1 mRNA downstream 832185 19024148 ~ 19127654 (+) False zeb2b
XM_039793123.1 mRNA downstream 832185 19024148 ~ 19127654 (+) False zeb2b
XM_039793122.1 mRNA downstream 832185 19024148 ~ 19127654 (+) False zeb2b
TU319969 other upstream 9496 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 19354 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 230746 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 1086095 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 1086667 17104568 ~ 17104641 (+) True trnat-agu_66
TU320432 other downstream 1804836 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2016366 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 2191423 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 2295704 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 2623773 20815736 ~ 20821724 (+) False fmnl2b

Expression Profile