RNA id: TU319995


Basic Information

Item Value
RNA id TU319995
length 2058
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G235793
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18062294 ~ 18113957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagttttTAAAGAAGTCGCAACATGACAAACTCTGGACACAGGCGCCATTGTAAAACAACCACTACTCGACATATATCCTTCCCTGTAacatttctgtctttgtcttctttATTTGACTGAGGAGGACCGGGACGGTGGTGGATTTCTTGCGTTTTGAGAGTTTTTTTGCGTTACCTTGGACTacgtttgattttttttttttgggtgcttttccgcctttaatcgacaggacagctaggtgagaaaggggagagaggggggggcaggcaggaaatcgtcacaggtcggactcgaaccctggacctctgcgtcgaggcataaacctctatgtatatgtgcgcctgctctacccactgatccaacccggccacgtttgattgttttttgtaACCGATTTTCCCTTAttttaaagaatatttatttGGATTTTGTAGTGGGACAGATGGTTTGCAGGTAGATGGGGTGGGGGGTTTCCGTGTCGCAGCCTCTGGACAAAAAGGGCTGGAGGAGAACGCCTTCATGTGTCGATTTTTAGAgaaaaatactgtaatactgtaatGAAGTATAACACAACAATATCCTCGATGTGGGGCGGTAGTTTCAGTACTTGACTTTGTATTTGTGTAGGTACCTCAGCAGAGAGCGTGCCAAAGCGGACATTCACTAGGATAAAGCACATCAAATGTCTTACGGCGACGCACACGAAGCTAGAAATACAAGCGGGTCGGACAAAAAGGCGTCTGAAAGCAAACCGAAAAGCCCCCAAGAGTGCTTTAACCCCCCccggttttctttctttctttttttttttgttgctgctgATTGTGTTCAAGTTCATTCGATAATCTGAACTATCTTAACGCCACGCCGGTCCGCGGTTTAACTTGAAAGgggggggggggggcggggcagAGGCACGTTCAGTCTCAAAACGGTGTACCCCGTGTTGCTCCGGATTTCCTGGTCGAACGACGCGTTTCCCTCGGAAACGGCGGGAAACGGCGGGAAACGGCGAGCAATGGGCTTTGAATGACGTTTTCTCTCGTTTTGGTGGCTGTGTTCAAAGGGGTAATTTAAATTATTGGAGGGGTGGTTCCAACCCctccaataatcaaaactggccagcgccagctttctttttttcaaactaaTAAAATTAGGTTTCTACATAAGCGTGACCTGACTGTCGGCCCCCCGGGTCATCAGCGTCAGCTGCGCAGTCATGAGATCTGGACTGGCGCCTCGATGCTCTTTCGTGCGTCTGGCGACGGAGCGAACGCCGAGCCGTTTTTTTCTGGGACCTCGGCGAAGCGCTTGTGTGTTGTATATAATTCCTCATGACACGTGAACCCTAACACTAACcgtaaccataacttgtcatgacaaaaaaaccGAAGGACGCTCACTAAAAGAGGCGttgtgtcataaacgtttatgacttgtttatgacacgttcatgacagtgtcacgtCCAGATGTCGTGACTGAGCTGCTGACCCTGATGACTCATggcactcttatgtagataccttcaagtaaagtctACATTAAtgaagacatttgcaccataaatagaaaaaaaagcacCGGAATACAGAAAATTAAGTGTTAATTGCTCAAAAGTgggctgaacgtggccctgGCTTTTACGGCCGACGGTAGCCGTCATTACATCAGTGGTGAATAATCGTGTTTTTAAAGCTGCTAGTGAATCCTGCAGAACGAGGGGAACCCTGACCGGTCCGAGGTCAGGAGGACActaaggaggaaaagaaaagccCTTCTTCTGTCTGCAGGATTCACAGCTCCCTGGAGTCCCGGGCGTCCCCTCAGGACGTCCCGTTTAACAGTCCATAATGCCATTGTGTTGCACAGTTGAAGTTGAATTGCAGAATTCATATTTGTAAAATCATGAGAACAAAGATAATAAAATTATTGAGATTTACTGGTGTAGTACCGCTTGGTTCTTGTTTTTATCTATAAATCACTGGAAGGCAGAAAGTCTGGCTTTCGAGGGGTTTTTAAAGCGCCGTTTTCTGCTGATGTTTTCTTTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319927 lncRNA downstream 124158 17985922 ~ 17986178 (-) True G235743
TU319909 lncRNA downstream 166839 17943210 ~ 17943497 (-) True G235725
TU319904 lncRNA downstream 170009 17934775 ~ 17940327 (-) True G235724
TU319906 lncRNA downstream 170064 17939114 ~ 17940272 (-) False G235724
TU319903 lncRNA downstream 179351 17930532 ~ 17930985 (-) True G235723
TU320026 lncRNA upstream 96546 18210503 ~ 18214168 (-) True G235816
TU320056 lncRNA upstream 138867 18252824 ~ 18300953 (-) True G235844
XR_005638536.1 lncRNA upstream 142986 18256943 ~ 18257506 (-) True LOC120554613
TU320063 lncRNA upstream 157121 18271078 ~ 18276814 (-) False LOC120554370
TU320066 lncRNA upstream 157185 18271142 ~ 18276814 (-) False LOC120554370
XM_039793650.1 mRNA downstream 8305 18029836 ~ 18102031 (-) False LOC120554632
XM_039793645.1 mRNA downstream 28778 18029836 ~ 18081558 (-) True LOC120554632
XM_039793649.1 mRNA downstream 28779 18029836 ~ 18081557 (-) False LOC120554632
XM_039793647.1 mRNA downstream 28779 18029836 ~ 18081557 (-) False LOC120554632
XM_039793648.1 mRNA downstream 28779 18029836 ~ 18081557 (-) False LOC120554632
XM_039793726.1 mRNA upstream 38 18113995 ~ 18143453 (-) True abi2b
XM_039793724.1 mRNA upstream 38 18113995 ~ 18143451 (-) False abi2b
XM_039793725.1 mRNA upstream 39 18113996 ~ 18143451 (-) False abi2b
XM_039793723.1 mRNA upstream 39 18113996 ~ 18143451 (-) False abi2b
XM_039793727.1 mRNA upstream 30020 18143977 ~ 18158300 (-) True LOC120554721
TU319844 other downstream 365136 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 1006819 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 1201918 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 1202514 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 1202851 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 1617362 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2253384 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2612446 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2612573 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 2646751 20760708 ~ 20760992 (-) True G236349

Expression Profile