RNA id: TU320144


Basic Information

Item Value
RNA id TU320144
length 208
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G235914
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18697646 ~ 18697853 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttataaaatctgatgtttgattctaaagtaaactagccaacaatataacggctacaagtccagctgagatgattagaccattaaacacacaatcCTTTactggatcctttactctttctacaatgggaggagagttctttacttttaatactttaactacattttcctgatgatacttacagacttttactgaagtaacattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320143 lncRNA upstream 90550 18606886 ~ 18607096 (+) True G235913
TU320099 lncRNA upstream 231370 18390601 ~ 18466276 (+) True G235874
TU320096 lncRNA upstream 321261 18375165 ~ 18376385 (+) True G235871
TU320094 lncRNA upstream 326530 18368908 ~ 18371116 (+) True G235870
TU320092 lncRNA upstream 336834 18357084 ~ 18360812 (+) True G235869
TU320145 lncRNA downstream 89555 18787408 ~ 18787617 (+) True G235915
TU320148 lncRNA downstream 260802 18958655 ~ 18958873 (+) True G235918
TU320142 lncRNA downstream 429840 19127693 ~ 19129176 (+) True G235912
XR_005638302.1 lncRNA downstream 442012 19139865 ~ 19142447 (+) True LOC120554064
TU320154 lncRNA downstream 446368 19144221 ~ 19144437 (+) True G235924
XM_039792596.1 mRNA upstream 244644 18444179 ~ 18453002 (+) False orc4
XM_039792597.1 mRNA upstream 244644 18444814 ~ 18453002 (+) True orc4
XM_039792550.1 mRNA upstream 459221 18188650 ~ 18238425 (+) True LOC120554001
XM_039792962.1 mRNA upstream 731420 17953139 ~ 17966226 (+) False LOC120554216
XM_039793121.1 mRNA downstream 326295 19024148 ~ 19127654 (+) False zeb2b
XM_039793123.1 mRNA downstream 326295 19024148 ~ 19127654 (+) False zeb2b
XM_039793122.1 mRNA downstream 326295 19024148 ~ 19127654 (+) False zeb2b
XM_039793126.1 mRNA downstream 326295 19024148 ~ 19127654 (+) False zeb2b
XM_039793124.1 mRNA downstream 337782 19035635 ~ 19127654 (+) True zeb2b
TU319969 other upstream 515834 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 525692 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 737084 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 1592433 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 1593005 17104568 ~ 17104641 (+) True trnat-agu_66
TU320432 other downstream 1298946 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 1510476 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 1685533 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 1789814 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 2117883 20815736 ~ 20821724 (+) False fmnl2b

Expression Profile