RNA id: TU320318


Basic Information

Item Value
RNA id TU320318
length 2006
lncRNA type sense_over
GC content 0.42
exon number 4
gene id anos1a
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19671872 ~ 19698895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGATTCACGAGTTCTGCCGTTTACGTTAGGCTAGTGTAGAGTTGGCAGATTTTTTCCTTAACTCCCTCTGCATCAACGATGTGCCCTGAGGCGGTGGACACCAGCTAGCATCAGGGATGGAAATGTCCTGGTGGTGCCAGGCCTGCATCCGGCCGGTCTGTATCGGCTGGAGGTCCAGGCCATCACAGCAGAGGGTGAAGGTCCTGCAACCAGCCGCACCTTTCAGACCCCTGGACACCAAAGCACCGTGAAGCACAGAACCAGGCTGAGGAAGCAGCACCATAAACAGCCAATCATTGAGAGGCACTGAGcccagacagccaatcagcatgcatgAACCAAGTCTCCCAAACTCAGGATGATCAGGAATCCACAGAACAGGAATCAGTAGCGAAGAAACGTAGCCTCACCAGCTTTATGATCCAGATGAATTCTCCCAAACAACTAGCAACCATTTGAATATCTTCCAGTGGACTGACCGCATTACTCTGAAACAGCAGTAAAGTTGTGAGGAACTTCCTTTTGACTCCCAGCTGAGAGTACATCTCAGCACTTGTTTGTAATATGTGGGTGTAGATCATCATAGCATGTAGATGCAGTAGCTATACAAATTGTGTTACCTGTAGGGCTGGGTATGATTACGTTCAGGGCTTTAAAATGACACccgccaaatgcgggtgaaaattaactttgatgggaaacattgtaaagttattagCGAGTTTGGCCGGTGATGAAAGAAGCAAAAAATACTGCGTCTGTTGGAATCGGCCGGCTGCAGAAACAATGTGACAGGTTACCAGATTAATCTGTTTTCCACCAAGAAATTTGggcggttttgtgtgtgtttggcttggaaATGTAATCTTTATCTGGCAACACAGCTCGTAGtactaatcctacatttcccataaacaCTATGTCGTGACCGTCGGCTACGTGCTAAGCGTGTAGTACCGATTAAGAGCTACGCTGAAACGGAGAAGACAAACCGTAAAGTAAAGTTAGTTaggaaacaacaaacaaacatggctagtggaaaatctgattggctactaACTTAAAAGATCTACTAGCCgtgttggctggtgatcaaagaagttaatttaaagccctgatTATGTTACATTAATACATAAACCAACTTTTAGTACCAAAACCTAAAGAATGAAAGCTTGTTATTacataaaaactatttttcttAGGAGGGCTATTGAAACTAATACTGGAAGTACACAAATTCCATCTCTGCCCAACAAGCGCTTGGACATCTTTCCAAACAAGACTTCTCCATGAGCGAGACTTggttagacacaaaaacaaagtgaaaggtgaagaaaaaagttttatttctctgtagggatcctttccataatgttgtcagacacttagaataataatctgagtctgtcagcggcaaaaacagaacttttagtggacgctaactgaAGGTGCGTAATGACCCCAAAGGATTAAATTACGTTGTTGTTGCCTGCAGCATTCTTTTTCAATACTGGATGAATAAATAAtctacagattaatcgacaatgaaatcATCAGTTGCAGGCCTACAACTTAAGTCAGTTCTTTATTCTGCCGACACAATTTGTTCTCTCTTCCAGAAGTATTACGGTTTGATATCCAGCCCTAATTCCCTGCTGTACCTTTACAAAATCCCTTTGATGGAATTGCATGCAAACACCTGAATGTTAAAAGTGTTGTCGTCAGCACAGAGTGCTATCTTCTACATTTTAAAACCTGAGAAATAATTTCCTGCGACTAATTCCCTGATGAGATTTGTTGCTTTGACATGTAGCTCCCCTGTAACTCTGTAAATGCTGTATATACtgtttgtctgtatttatttGTGACTGGACGAGTGTGAAACAcgtctactgtgtgtgtgtgctcagtcTTTATAAACCTCCAGAGACGCTGTACAAAGTTGTTTTTCCAACTGAAGATAAATCCCATGTCGATATGTGTCGACTTTGCACGTGagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320309 lncRNA upstream 37783 19657041 ~ 19657270 (+) True G236060
TU320306 lncRNA upstream 39947 19654827 ~ 19655106 (+) True G236057
TU320295 lncRNA upstream 63597 19630758 ~ 19631456 (+) True G236046
TU320294 lncRNA upstream 64660 19629440 ~ 19630393 (+) True G236045
TU320293 lncRNA upstream 67085 19626229 ~ 19627968 (+) True G236044
XR_005638365.1 lncRNA downstream 57110 19756005 ~ 19784765 (+) True LOC120554317
TU320418 lncRNA downstream 163208 19862103 ~ 19862319 (+) True G236148
TU320423 lncRNA downstream 286784 19985679 ~ 19986696 (+) False nlgn4xa
TU320446 lncRNA downstream 350570 20049465 ~ 20049864 (+) True G236176
TU320449 lncRNA downstream 371211 20070106 ~ 20070640 (+) True G236179
XM_039793805.1 mRNA upstream 88053 19602721 ~ 19607000 (+) True si:ch211-246m6.4
XM_039792552.1 mRNA upstream 95384 19585535 ~ 19599669 (+) True LOC120554004
XM_039792649.1 mRNA upstream 172384 19512902 ~ 19522669 (+) True LOC120554051
XM_039793124.1 mRNA upstream 567399 19035635 ~ 19127654 (+) True zeb2b
XM_039793138.1 mRNA downstream 13789 19712684 ~ 19732543 (+) True sts
XM_039793140.1 mRNA downstream 13796 19712691 ~ 19732543 (+) False sts
XM_039793139.1 mRNA downstream 14066 19712961 ~ 19732543 (+) False sts
XM_039793532.1 mRNA downstream 117870 19816765 ~ 19818483 (+) True LOC120554574
XM_039792554.1 mRNA downstream 120971 19819866 ~ 19832208 (+) True LOC120554006
TU319969 other upstream 1513241 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 1523099 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 1734491 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 2589840 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 2590412 17104568 ~ 17104641 (+) True trnat-agu_66
TU320432 other downstream 297904 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 509434 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 684491 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 788772 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 1116841 20815736 ~ 20821724 (+) False fmnl2b

Expression Profile