RNA id: TU320378



Basic Information


Item Value
RNA id TU320378
length 703
RNA type TUCP
GC content 0.51
exon number 2
gene id G236111
representative True

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19731319 ~ 19732537 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCACACAACACCTTTATTTAATCCTACCAAAGGAAAAGACATCATTTAAGACTTTCAAGACCTCTTTAGAATATTAAATGTAAGACTTTATTAATACCTTGAAGGCCCACTTTGGCTCAACAGACATAGACCAACATATTAGGATTTTTTTATAGAAATATGAGAAGATTAGTTCTAAGTGAAAGTCTCCTGGAGTTTCCTGTTAGGAATGAGTGTGAAGAGAGTTAAGCATCCTGCGGGCACTGACAGAGCTGTGTGAGTGTGGAGCAGCACGGCTGCAGCCAGGGCTTCCACATCACATTCCCCGGCGATATCTGGCTCTCCACCGGCTCCACCGACTTGCGATGTGTCTCGGCTGCCGCCTCCATTGTAGCCAGGACGGCGTGGAAGGCCGGCTCAGTGTCGGGAGTCAGTGGCGTCGTCTCCGACGGGTCCCTGAACACGTCGAAGAGCAGCGGAGGGTCGTGGTACGTCACGTAGCCCGGCGTGCAGAAGCAGACGTGCGTGTGGAAACACGCCGTCTCGTTCTCTGGGTAGAAGTTTGGGGTGAAGAAAAAGGCTTTCCACACCGAGCTGCCTGTGTTTTTGGGATGCCATCTGACTGCGTTCAAGTAGGCGTTGCAGTAATGGAAGAGAAACTCGTGGTTGGAACGATCAACTGTCCCCTGAAGCAGATCCATGAGGTCCTGACCGTCTATCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU320370 lncRNA downstream 8414 19720632 ~ 19722905 (-) True G236103
TU320367 lncRNA downstream 32241 19696468 ~ 19699078 (-) True G236100
TU320355 lncRNA downstream 63327 19663910 ~ 19667992 (-) True G236094
TU320356 lncRNA downstream 63327 19663910 ~ 19667992 (-) False G236094
TU320357 lncRNA downstream 63327 19663910 ~ 19667992 (-) False G236094
TU320422 lncRNA upstream 140640 19873177 ~ 19873387 (-) True G236152
TU320425 lncRNA upstream 180772 19913309 ~ 19913970 (-) True G236155
TU320426 lncRNA upstream 245285 19977822 ~ 19978682 (-) True G236156
TU320427 lncRNA upstream 250168 19982705 ~ 19986993 (-) True G236157
TU320445 lncRNA upstream 306464 20039001 ~ 20039265 (-) True G236175
XM_039792553.1 mRNA downstream 77007 19622102 ~ 19654312 (-) True aox6
XM_039793147.1 mRNA downstream 109668 19608622 ~ 19621651 (-) True bzw1a
XM_039793267.1 mRNA downstream 150061 19551436 ~ 19581258 (-) False kynu
XM_039793266.1 mRNA downstream 169246 19551436 ~ 19562073 (-) False kynu
XM_039793265.1 mRNA downstream 169246 19551436 ~ 19562073 (-) True kynu
XM_039793144.1 mRNA upstream 16534 19749071 ~ 19755969 (-) False pnpla4
XM_039793143.1 mRNA upstream 16534 19749071 ~ 19755962 (-) False pnpla4
XM_039793142.1 mRNA upstream 16534 19749071 ~ 19755962 (-) True pnpla4
XM_039792919.1 mRNA upstream 643056 20375593 ~ 20380492 (-) False dhrsx
XM_039792917.1 mRNA upstream 643056 20375593 ~ 20380492 (-) False dhrsx
TU319844 other downstream 1986119 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 2627802 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 2822901 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 2823497 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 2823834 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320553 other upstream 634804 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 993866 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 993993 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 1028171 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 1110955 20843492 ~ 20853383 (-) False rgn

Expression Profile