RNA id: TU320427


Basic Information

Item Value
RNA id TU320427
length 4289
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G236157
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19982705 ~ 19986993 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCCAAtcccatatacagtacaggccaaaagtttggacacaccaagggtggctactttgaagaatctaaaatataagacatgttttcagttatttcacacttttttgttaagtacataattccacatgtgtccattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaataaaaaggaaacacattgattggcctgtactgtacacacacaaccattcaAATCAAACCCAATTCAATCttccatgtttgttttttctctttttttttttagaaaatactGTGATATTTTATTCAAAAATGTTGCAGAAAAAGTTTATACAGGTGTCCAGCCAGAAATATCTCTATCATCACTTAAGGCAAAACCGCAAACAAAAATAAGACAAACTAAGGATTTTTAAAGTCTACATTTAAACCCTTGTTAAGTTGACTGGTTTAGGGACCAAATGGCAACAACAAACCTTTTATAGaatttacaaatgtagcttAAAATCTTCTGGATGTActtccattttctttttgtaataGGATGCAAAACGGAAAAGAGAATTAATGGTATACTCttgttgtaattttataataatattaatatttacacTCATTCACTTGCTTTTGTAACCCAAAATATCACAAGCCTGGCACAATACTTTACATATTGCTAGCGTAtgacaatttaaaatatttaacataTATTTCTTTACAAACATCTCCAACTAATATTGGTACAAAAAATCCACtgccttttttatttctaaataatacATTGCTGGTCACATTGTAAGCTCAGGCAGTGCTGAGATTGCAAGACAGAAACAAAGCCCACAAAGAAAACTATCAGAAGTGTAACAGGATGATAAAAGGTGATGGAATCAAGTCAGTCCACATTCTAAGACAGGAGACGTGTCTGAAAATGAAGAGTAAAGCTCTTCCTTGGacgtgcagtgtctgaaatgaGGAAACAATACACCGCATGAGACAGTACGGTCTGATGTTTGTGATAGGACCTACAGGCGCAACAGTGTGCAACTCTCCGAGGATGGGATTGTGTTCGCATTTTGGTcgttttgtgaaaaaaaaataatgaaacacAGGTTGTgatcaggaaaaaaaagaagactgtTTGGATATATTTACACGCAGCTAAACAGAAAAGCACAAGCTGTTAAAACCCAAAAGatctcagccaaaataaaaacaattatagAAGGTATGGAAACTGAGACCGGCCGTGTTCGCAAGTATGTTTTTAATATCATCAAAAGATCACAAAAGATAGTTTTCTCTTATTATTCATAATGTATATCAGCATTCAAACGGCCCAGCCAGATGGAGCTGACCGGACTTTTACTTTGGAAAATCTCTTAACTGATGCAATaaaaatgcttcttttttttctgtatgtaGTCAGAGATGTTCTCGACTCCAtccttttttttgcatttcaaaataaagtcaaaATGTCGAGATTAAAGTTGAACTTTCAGTGTAAATATACGTAAGCATAAGCATaagaaaaaacaataaacttAAAGGAGGGAGTTGTTTTTTGCATTTAGAGAACAAGGTTGAAATGTCAACAAAGTAAAAATTAAATATTGAGAATATAGAAATACAATGTAGAATAAAATCAGAATGCAGAGAATAAACttgaaaatttatattttttatgtttttaaaatgcaaactaaataaaaagtcCGTCACCGCCACCTTGATCTGGCACATTTGAACTTCTGATCTCTGATAAACATTTTAACTAATAAGAGGAAACAATCTTTGGATTTTTCtcgaattaaaaaaaataattacaagaTAATTACAAGGACGGCCGTTCTGGGCTTCCATAAGAAGAAGCTCTTTTAATACAATTTTCTCTTTTAGATTTTTAAATTTCCACGCACAactatatactttttttttttttttttttctttttttttttaaacaaagttttcatAAATACATTTCAGGCTGGGGTGTAGAATTCTGTGCCCAAGTCAGGAGTCTGAAGCATGAAGATTGTTTCAGACGGTCAATTGTTGCTTTTCAACAACAGTTCTTCCTGTTGTGTATTTATGGCACAAAAGCCTCTCTCACAAAAAAGTCACACTGAAACTGTTCACATCATATTTTAAGAATATTAATAGTCATCCCCTGTTCGCCTTTTTCTTTTGGTAAAACTCCTCGACAAACCTTCAATGAAGCTTGGCTCCGAGTAGAGTTATTACTATGGTAACATTCACTTTGAATAAGTTCAGGATCAGTTTATATATGCTTTTCAAGAAGGCATGGTAGCAAAATAGCATCTGCTAAGTCTGTGCTTCCCCACAGTCAGTCACTCATATTTCCTTTGCGAGGTTACATCGAAAAGGACACGCAGCGCCATCCAGTGgacaggggcggagccagatgtTGTAAACATTGGGGGCTCAGCCAACAAAACATTGGGGGCTCGGCCGAAAATCTAGGGTGGGGTAGATTTTCCCCAGTTACGGCAGCTATGTGCCCTATTTTTCAAGCAATTTGATAAATAAATGCCTAAAAGTCTGTACATCATACAGAAAACCAGATTGTAAGATAGTTAGCCGAGGAAAACGTTCATCCTGTCGAGCCTATGTCCTGTTTTGTATCTAATTGTTTGccaactgtcttcatcattctgaaatcagaaaaaaacaaatgttgaggatGCAATACAGTCTCTCTCCCAGCACAAAAAACATGACACTTGGtcagggtcctttggtgttagttagttactgacgcaaaaagtTTGCTTTAGCGTCTCAGTCAGACACAGGGGTCTTTCAGCTAATTCAAACGTAATCCCATCCGATATTTGACATTCTGGGTAAGTCTTTGCCATCATTTTTTAACACGCTTTGTCTGGACCCTTGGCAGtttaaaaggaagaaaaagggTTTACGGTGAAAACAGATTAAAGGAGTCAGGGTTAGGATCAGACGCTAAAAGGTGCTTTTTGCGTCAGTATCTGACGCTGAAAGCCACTGACCAATGTTGACGAGTATTTAaagagttgggagtgagaacaggttgcAGGATGACACATTTTTCACTCCTGCCATCTAAAAAGGGGCAAGAATTGTCTGATGTTACCGTTTGTTAAGGCTACATATCGTCGGTAGGGTAGGAATTTAGCGTAAACAACATTACCAATCTTGAAACCTATTTTTAGAAGAGTTTACAGAATGAATGCTGAACTTTTTCTGCATTGATTTTGCCGATCCAGTCTGAGAGACTGAGGAAAAGTGacacaaagttgaagttattttaaaactcTAGGTGTCAGGGCTTTGGAAAAAACATTCTGGGCTGATCCCCCCCGCCGCCGCTGCGCCCCTGCCAGCGAAGCTATACCCGCGTGGTGGAGTGGCCGTGGGGTAAGTTGGTACTGTTCTGGCTGCCCCCGAAAGCATTGAAGTTGTGCAGAGGCTGCATGCCAGCCAGCGCGTTGGGAATCATGGTGATGGTGCTGGGCGCCATCAGCGGTATGTCGTCGGGCGAGCGGCGCAGCGTCAGCGTGTAATCAGGAGGGCAGGCGAGGCGCAGCGCGTCGTGGCTCTGCAGCGACTCACACTCGTGGTGGTGCTCGTgctccagctgctgctgcttcatctGCAGAGACATCAGCTCCTCACTCTGCAGGTGGGCCACGTCATTGGCGTTGGCGTTGGTGGTGGAAGGCGTGTTGGTCGGCGCCAAATTGCGCTGCGGCGTCGGGATGCGCCGGTTGGTCTCGTGTCGCCGCTTGTCTTTCTTGTAGTAGAGCGCGGCAAAGGCCAGGATGTTGAGAAACAGCAGCGAGGCTCCGACTGCGATTGTGACGCTCAGCTCTGTAGAGTAGTCCCGCTTGGTTTCTATAACAACGGTCGACTCGTCGGTCAGATCGCCGCTCTTTCGCTGGTCAGTGGTTTGTTTGGTGTTGGCGGGTGGGACCCCCGGGTGCCTTGTGGTTGACGGCCAGTTGTTTTTGCCCGGGAAGCGTTTGGTGTAAGGGTATGGAGTGGTGTCCTGCGGAGGGATTTTGGTCGTGGTGGACACGTATTGGAAGAATTCGTTGATGTTGTGCAGATGCGGAACCAGTTCCAACCAGAATGCCACCTTGGTTGCGCGGTAGTGGTCCCGCACTCGCGGTTTGAGGCCGATGTGAAGGTACAGCTGGTCTTTGGGGTTGTACTTGGTCCAGGCCACCTCCTCGAAGCGGTTGGGTTTGGTGTGGATGAACTTTGTGTCCTGCGGGACCGGTTGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320426 lncRNA downstream 4023 19977822 ~ 19978682 (-) True G236156
TU320425 lncRNA downstream 68735 19913309 ~ 19913970 (-) True G236155
TU320422 lncRNA downstream 109318 19873177 ~ 19873387 (-) True G236152
TU320370 lncRNA downstream 259800 19720632 ~ 19722905 (-) True G236103
TU320367 lncRNA downstream 283627 19696468 ~ 19699078 (-) True G236100
TU320445 lncRNA upstream 52008 20039001 ~ 20039265 (-) True G236175
TU320447 lncRNA upstream 62507 20049500 ~ 20049889 (-) True G236177
TU320460 lncRNA upstream 107232 20094225 ~ 20094730 (-) True G236190
TU320463 lncRNA upstream 155778 20142771 ~ 20142995 (-) True G236193
TU320467 lncRNA upstream 199396 20186389 ~ 20186866 (-) True G236197
XM_039793144.1 mRNA downstream 226736 19749071 ~ 19755969 (-) False pnpla4
XM_039793143.1 mRNA downstream 226743 19749071 ~ 19755962 (-) False pnpla4
XM_039793142.1 mRNA downstream 226743 19749071 ~ 19755962 (-) True pnpla4
XM_039792553.1 mRNA downstream 328393 19622102 ~ 19654312 (-) True aox6
XM_039793147.1 mRNA downstream 361054 19608622 ~ 19621651 (-) True bzw1a
XM_039792919.1 mRNA upstream 388600 20375593 ~ 20380492 (-) False dhrsx
XM_039792917.1 mRNA upstream 388600 20375593 ~ 20380492 (-) False dhrsx
XM_039792918.1 mRNA upstream 388600 20375593 ~ 20380492 (-) False dhrsx
XM_039792916.1 mRNA upstream 388600 20375593 ~ 20380491 (-) True dhrsx
XM_039793653.1 mRNA upstream 455988 20442981 ~ 20456063 (-) True LOC120554635
TU320378 other downstream 250168 19731319 ~ 19732537 (-) True G236111
TU319844 other downstream 2237505 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 2879188 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 3074287 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 3074883 16907750 ~ 16907822 (-) True trnat-cgu_24
TU320553 other upstream 380348 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 739410 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 739537 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 773715 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 856499 20843492 ~ 20853383 (-) False rgn

Expression Profile