RNA id: TU320432


Basic Information

Item Value
RNA id TU320432
length 848
RNA type TUCP
GC content 0.42
exon number 2
gene id G236162
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19996799 ~ 19997667 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcttgttttgccgctgacagactcagattattattataagtgtctgacaacattatggaaaggatccctacagagatagaccttttagttaaagagtaagatccttatttaaacataaaactaaacccaccagactccatgtaaataatcaggacttttatcatcgtaaaacacacttcattcaaagtggacagaaacaaaataaaactatcaaaagccgtcttggttcatctttccactgttccaacaatcaccactctggtctggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggccctatacacgctaaaagtcctgattatttacatggagtgtggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtgtggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtgtggtggagatatgctggctctatatacgctaaaagtcctgattatttacatggagtgtggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagaaatGCTGGCTCTCAACGCTctcaacgctctaaagacagtggagatggttgtggacttcaggaagaacccagccccacctgcccccatcacCCTCTGTGGCTCCACAATTGACACTGTGGAATCTTTCCACTTCCTGGGAACTACCATATCCCATGACatcaagtgggagctgaacatcagctccctcgtcaagaaagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320423 lncRNA upstream 10103 19985679 ~ 19986696 (+) False nlgn4xa
TU320418 lncRNA upstream 134480 19862103 ~ 19862319 (+) True G236148
TU320314 lncRNA upstream 168978 19667989 ~ 19827821 (+) True G236063
XR_005638365.1 lncRNA upstream 212034 19756005 ~ 19784765 (+) True LOC120554317
TU320318 lncRNA upstream 297904 19695053 ~ 19698895 (+) False anos1a
TU320446 lncRNA downstream 51798 20049465 ~ 20049864 (+) True G236176
TU320449 lncRNA downstream 72439 20070106 ~ 20070640 (+) True G236179
TU320457 lncRNA downstream 85361 20083028 ~ 20083281 (+) True G236187
TU320459 lncRNA downstream 96681 20094348 ~ 20094879 (+) True G236189
TU320466 lncRNA downstream 187986 20185653 ~ 20185880 (+) True G236196
XM_039793626.1 mRNA upstream 10070 19897092 ~ 19986729 (+) True nlgn4xa
XM_039793627.1 mRNA upstream 10070 19897096 ~ 19986729 (+) False nlgn4xa
XM_039793609.1 mRNA upstream 144845 19839605 ~ 19851954 (+) True LOC120554605
XM_039792554.1 mRNA upstream 164591 19819866 ~ 19832208 (+) True LOC120554006
XM_039793532.1 mRNA upstream 178316 19816765 ~ 19818483 (+) True LOC120554574
XM_039792602.1 mRNA downstream 31359 20029026 ~ 20034729 (+) True LOC120554034
XM_039793186.1 mRNA downstream 210664 20208331 ~ 20234852 (+) True prkx
XM_039793657.1 mRNA downstream 260676 20258343 ~ 20271296 (+) True mxra5a
XM_039793633.1 mRNA downstream 314857 20312524 ~ 20341903 (+) True fam207a
XM_039793632.1 mRNA downstream 325825 20323492 ~ 20325622 (+) True LOC120554617
TU319969 other upstream 1814987 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 1824845 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 2036237 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 2891586 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 2892158 17104568 ~ 17104641 (+) True trnat-agu_66
XR_005638373.1 other downstream 210662 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 385719 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 490000 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 818069 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 914988 20912655 ~ 20916777 (+) True G236394

Expression Profile