RNA id: TU320469


Basic Information

Item Value
RNA id TU320469
length 207
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G236199
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20207730 ~ 20207936 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagttataccaaggtgctagtttcctttgcttcatcttcttctttttgagtggagcaacagagtctaaagtagtccgtaggcaggccgtaacaccatctacacaattgtcgatttgagagggactaaagtttacataaaggtcctctgttgtattaaaacaaggtaatgagtttagtgctgttggaatgtcttccttaaatttagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320466 lncRNA upstream 21850 20185653 ~ 20185880 (+) True G236196
TU320459 lncRNA upstream 112851 20094348 ~ 20094879 (+) True G236189
TU320457 lncRNA upstream 124449 20083028 ~ 20083281 (+) True G236187
TU320449 lncRNA upstream 137090 20070106 ~ 20070640 (+) True G236179
TU320446 lncRNA upstream 157866 20049465 ~ 20049864 (+) True G236176
XR_005638292.1 lncRNA downstream 75220 20283156 ~ 20284898 (+) True LOC120554047
XR_005638293.1 lncRNA downstream 75220 20283156 ~ 20284898 (+) False LOC120554047
TU320530 lncRNA downstream 90440 20298376 ~ 20298640 (+) True G236258
TU320532 lncRNA downstream 126425 20334361 ~ 20334970 (+) True G236260
TU320543 lncRNA downstream 167659 20375595 ~ 20377740 (+) False LOC120554192
XM_039792602.1 mRNA upstream 173001 20029026 ~ 20034729 (+) True LOC120554034
XM_039793626.1 mRNA upstream 221001 19897092 ~ 19986729 (+) True nlgn4xa
XM_039793627.1 mRNA upstream 221001 19897096 ~ 19986729 (+) False nlgn4xa
XM_039793609.1 mRNA upstream 355776 19839605 ~ 19851954 (+) True LOC120554605
XM_039792554.1 mRNA upstream 375522 19819866 ~ 19832208 (+) True LOC120554006
XM_039793186.1 mRNA downstream 395 20208331 ~ 20234852 (+) True prkx
XM_039793657.1 mRNA downstream 50407 20258343 ~ 20271296 (+) True mxra5a
XM_039793633.1 mRNA downstream 104588 20312524 ~ 20341903 (+) True fam207a
XM_039793632.1 mRNA downstream 115556 20323492 ~ 20325622 (+) True LOC120554617
XM_039792914.1 mRNA downstream 147366 20355302 ~ 20375600 (+) True LOC120554192
TU320432 other upstream 210063 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2025918 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 2035776 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 2247168 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 3102517 17105141 ~ 17105213 (+) True trnat-cgu_30
XR_005638373.1 other downstream 393 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 175450 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 279731 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 607800 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 704719 20912655 ~ 20916777 (+) True G236394

Expression Profile