RNA id: TU320517


Basic Information

Item Value
RNA id TU320517
length 439
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G236245
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20266043 ~ 20266481 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTCTGCGCCTGTGGACAATGTTTTGGGTTGCGATACATGTGGTGCCACTGTAGATGGGATCACAGCATCAGGCCTTGATGAAGTAGCAGAGGGAGGTTTTGTAATGACGGTACTTGTAAAAAGGTCATCAACATTACTTCCtatgtttgttgtttctttagGATGGCGTTCTAACTCTGACTCACTActtgtggttttatttttacttgAACTATGATAGGATTTTTCAGGTATTGTAGATGTCTTTGTGGTAATCTGATTGGTGTCTGAATCACCCTCAAAAAAATGCTCAGCCATGTTTTGATAAAGCCACTTGACGTGTATTCAGAAGTTGTCCTGATTTCACGCTCCATCAAGGAAGCAGCTGAGGCGGACAGGGTTGGCAGCGGCAGAGAAGAATGCTTGTCAGTCTCTTTCAAAAGCATCTGTTCACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320504 lncRNA downstream 4975 20233669 ~ 20261068 (-) True G236232
TU320468 lncRNA downstream 59494 20206307 ~ 20206549 (-) True G236198
TU320467 lncRNA downstream 79177 20186389 ~ 20186866 (-) True G236197
TU320463 lncRNA downstream 123048 20142771 ~ 20142995 (-) True G236193
TU320460 lncRNA downstream 171313 20094225 ~ 20094730 (-) True G236190
TU320518 lncRNA upstream 5 20266486 ~ 20266731 (-) True G236246
TU320519 lncRNA upstream 1386 20267867 ~ 20268667 (-) True G236247
TU320520 lncRNA upstream 4003 20270484 ~ 20271413 (-) True G236248
TU320521 lncRNA upstream 4994 20271475 ~ 20272734 (-) True G236249
TU320534 lncRNA upstream 39012 20305493 ~ 20312827 (-) True G236261
XM_039793144.1 mRNA downstream 510074 19749071 ~ 19755969 (-) False pnpla4
XM_039793143.1 mRNA downstream 510081 19749071 ~ 19755962 (-) False pnpla4
XM_039793142.1 mRNA downstream 510081 19749071 ~ 19755962 (-) True pnpla4
XM_039792553.1 mRNA downstream 611731 19622102 ~ 19654312 (-) True aox6
XM_039793147.1 mRNA downstream 644392 19608622 ~ 19621651 (-) True bzw1a
XM_039792919.1 mRNA upstream 109112 20375593 ~ 20380492 (-) False dhrsx
XM_039792917.1 mRNA upstream 109112 20375593 ~ 20380492 (-) False dhrsx
XM_039792918.1 mRNA upstream 109112 20375593 ~ 20380492 (-) False dhrsx
XM_039792916.1 mRNA upstream 109112 20375593 ~ 20380491 (-) True dhrsx
XM_039793653.1 mRNA upstream 176500 20442981 ~ 20456063 (-) True LOC120554635
TU320378 other downstream 533506 19731319 ~ 19732537 (-) True G236111
TU319844 other downstream 2520843 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 3162526 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 3357625 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 3358221 16907750 ~ 16907822 (-) True trnat-cgu_24
TU320553 other upstream 100860 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 459922 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 460049 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 494227 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 577011 20843492 ~ 20853383 (-) False rgn

Expression Profile