RNA id: TU320575


Basic Information

Item Value
RNA id TU320575
length 1795
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G236293
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20477186 ~ 20479038 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATGAAATAATGTAATATGGAAGACTTTGTGGCTCTGAAGTGTTTATGGCGACGTTAGAACACTGTGTAACTAACTAAGGCACATGAAAGAGATAACTTAGAGACTTCTCCAGATGTTCTCCTAGACCGTACCTGGGCGAAGTACAGTCTCATCTCTTTGCCGTTGAAGTCCGTCTTGTGGAGGCGGAGTCTGGCCTCGGCCGCCGCCGGAGCATCGCTGAAACTGATCCGCGCTCGCCGGAACGACTTGAAGTACTGGAACTGCACCGCCGGGTCAAAGGACCGGAACAAGGACTCAAAACCcgcctgcagagagacagagacagagatagagacaaagagagggagacagacagacagagagagagacagagagagagagagagagtatgtgtgtgagtgaaacaTTATGAACACAGTCTGAATGTCTGGATAAAAACAGCGTTTTGCTGAGTCGTCCTGCAGCACAGTGAGTCAGCATAACAATCACGGTTTTCTCAGCATCAGGGTGGCTTTTATATAGAAACTTTATATAGAAAACTACATAGACACTTGTTTATCGACAACTCTTATCACCCAAATATGGAATAATGGGTTTGAGAAGGCTCTCCTACCTGGGCCTCGGGACGGCTGAACACTTCCTGGTTGGTCACCGAGGCAACCAGGCAGAAGCGGTTACACCTGGTGGTCTTGATGTGCATGCCGGGCGATCCGGGGAGGCAAAACCTTTTACACCTGATACCCGAACTACGGGCGCAACGCCAGGACGCTGAAACCGCCCTGAGTGGTTGTGGCGAGGGCgtcagggaggaagaggaagaggccgAGGCCGGGGAAAACTGGGGGGGTCGGAGGAGCGTTGACTTCCCCAGGATGACGGGCGAGAAGGGAGCCAGCTCTGGACTCTGACACCTTTTGGATCTTTTCTGTGAGAAAGCTTTCTGTTCTGTCTTCACAGTCTAAGATCAAAACACACGTCAGAAAAGTGCACAGAAGGCACCAAAAAAAACGTCACAGAAGGGTTttaaaaaatcgttaataaagtgccaaaaaaagcatttaaagaATCGCCTAAAGAGCGCAATGAAAGCGTCTTGAAATCCTTTTGGATCTTTTCTGTCTTAGCAAAGCTTAGTTTTCTTCTGTCTCCACGGTGtctccccacccccccaacaGCAGTCCAAGGTTATCTGGAGCGTTCAGTGCTGATACTGACACACTGGAACAAACGCTGAGTCGTCCCTCTGCTTCGCCTCTGTGTGCAGGAAACAAACGGAGCGCCTGGGCTCTGCAGCAAACTGGAGGAATCTTCCAGAGATTTGGGTGTGGAAAGCTGAAAATATCTCTCTCCGACTGCTCACCAGCTGCTTAAATCAGCTGCTGCCAGCCGCTGACGCATTACCCACAATCCCCTCCTTCTCCCATTCATTCACTggagacttttttattttttcctccgATCTCTCTCTGACAGACACTAACGCTGAGTAATCACACAGAGAGAGCGCCTTTCTGGTCAATGGAAAactagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccctgcagTGAGACTGGAGACCACACCAGTCTCAGTTAACCCTTAGAGAACAGCCTTCTTTGGTTTCCTTTCCCTGGCGCAGATGAAACTGT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320560 lncRNA downstream 83152 20383151 ~ 20394034 (-) True G236282
TU320555 lncRNA downstream 103945 20373000 ~ 20373241 (-) True G236279
TU320534 lncRNA downstream 164359 20305493 ~ 20312827 (-) True G236261
TU320521 lncRNA downstream 204452 20271475 ~ 20272734 (-) True G236249
TU320520 lncRNA downstream 205773 20270484 ~ 20271413 (-) True G236248
TU320577 lncRNA upstream 117 20479155 ~ 20480319 (-) True G236294
TU320595 lncRNA upstream 30189 20509227 ~ 20511076 (-) True G236303
TU320601 lncRNA upstream 58863 20537901 ~ 20538114 (-) True G236309
TU320602 lncRNA upstream 61417 20540455 ~ 20540699 (-) True G236310
TU320603 lncRNA upstream 76677 20555715 ~ 20555983 (-) True G236311
XM_039793653.1 mRNA downstream 21123 20442981 ~ 20456063 (-) True LOC120554635
XM_039792919.1 mRNA downstream 96694 20375593 ~ 20380492 (-) False dhrsx
XM_039792917.1 mRNA downstream 96694 20375593 ~ 20380492 (-) False dhrsx
XM_039792918.1 mRNA downstream 96694 20375593 ~ 20380492 (-) False dhrsx
XM_039792916.1 mRNA downstream 96695 20375593 ~ 20380491 (-) True dhrsx
XM_039793228.1 mRNA upstream 315308 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA upstream 315308 20794346 ~ 20802205 (-) False LOC120554361
XM_039793229.1 mRNA upstream 315308 20794346 ~ 20802202 (-) False LOC120554361
XM_039792558.1 mRNA upstream 366263 20845301 ~ 20850464 (-) True rgn
XM_039793201.1 mRNA upstream 374527 20853565 ~ 20867800 (-) True vps16
TU320553 other downstream 108753 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 744649 19731319 ~ 19732537 (-) True G236111
TU319844 other downstream 2731986 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 3373669 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 3568768 16908345 ~ 16908418 (-) True trnat-agu_62
TU320640 other upstream 247365 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 247492 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 281670 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 364454 20843492 ~ 20853383 (-) False rgn
TU321084 other upstream 364454 20843492 ~ 20853383 (-) False rgn

Expression Profile