RNA id: XM_039793731.1


Basic Information

Item Value
RNA id XM_039793731.1
length 3090
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC120554724
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20487667 ~ 20511076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagatagagagggagacagagagaaagagagggtgaCAGAGAAAGTTTCAGCCTCTGTGGCTTCAGTTGTTTCCCGCAGTGGTCCGGTGCAGGTCTGGCGTTGGTTGGTCCGTGCAGCGTGGTGGTCTCCGGgccgtgtctctgtgtgatctGTTCCCGCTCTGCAGCCGACCCAGATCAGCCATGATCCTACAGATGACAGAAGTTtgagacaacaacaaatggctTCCACAGGGAGCGGCCTCCGCATCCCGGGGGACGACAACCTGCAATCCATGCTGGTGGGGACAATCATGAGGAAAATAAAGTCTCGAACCTGGAAGAAGCAGCGCTACTTCAAACTGCAGGACGACTGCATGACCATCTGGTACAAGTCCAAGAAGGCCGGGAACTCCCACTCCACATTTTCGGTGAGCGACGTGGAGGTGATCCGAGAGGGCCACCAGTCCGAGGTGCTGCTTAGCATTGCCGACGAGTTCCCAGCCGACCGATGCTTCACGCTGGTGTTTCGCGGTCGCCGGGGCAACCTGGACCTGGTGGCTGAGTCGGCAGAGGAAGCCCAGTCCTGGATCCGAGGAATCAGGAAGCTGATGGAGAACCTGGAGAACATGGGGGAGCGCGAGAGACTCGACCAATGGATCAGCGACTGGTTCAGGAAGGCAGACAAGAACAACGACGGGCGGATGAACTTCAGGGAAGTTCGAGACTTACTGAAAATGATGAACGTGGACATGAACGAGCACCACGCTCATCGCCTCTTCACGatGGCTGACAGGTCCCAGTCGGGGACGCTGGAGGATGACGAGTTTGTGCTCTTCTACAAGATGTTGACCCAGCGCGAGGATGTGCTGAGGGTGTTCCAGCAGTACTCGCTGGATGGCCAGACGTTATCCCAAAGCGACTTGGAGGACTTCCTCAGAGACGGCCAGCTGGAGGGGGACGATGTCCAGCAGCATGCCAAGACGCTCATCCAGCGCTACGAACCCTCCGACACAGCCAAGCTGCTGAATGCCATGACATTTGACGGCTTCTTGATGTACCTCGGCTCCCCTGAGGGCTCCATCTTTAACCCACGGTGGCGGGAAATCTTCCAGGACATGAGCCAGCCGCTGTGCCACTACTTCATCTCCTCCTCCCACAACACCTACCTGATGGAGGACCAGCTCCGTGGACAGAGCAGTGTGGAGGGATACATCAGGGCTCTGAGTCGGGGCTGTCGCTGTGTGGAAGTGGACTGCTGGGATGGCGCTAATGGAGAACCAATCGTGTATCACGGACACACGTTCACCTCCAGGATCCTCTTCAAGGACGTGGTCACTGCTGTGGGAAACTACGCCTTCAAGGTATCGGAGTACCCCGTCATCCTGTCCATGGAGAACCATTGCAGTGTTGAGCAGCAGAGAGTCATGGCCCGACACCTCAACCAAATCCTCGGAAACAAACTGCTGAAAAGCACATTAGACGGCAAAGCCGCCGTCGGCCTGCCGTCTCCGGAGGATCTAAAGGGGAAGATTCTGCTGAAGGCGAAGAAACTCGGCGGTCTGGAGGAGAGTTTCAGCGGCACGGCGGACGACTCTCAGGCGGGAGAGGTGAGCGATGATGACGAGGCTGAGATGGACGAAGATAACGTCCGCCAAAGTGTCCGCCACAGGGGGAAGAAGAAGTCGAAGCAGCGTCTGTCCAAGGAGTTGTCCGACTGCGTCGTCTACTGCAAAAGTGTCCACTTCAGCAACTTCAAACACTCGCACATCCACTCCAAGTTCTACGAGGTGGCGTCTTTCACCGAGTCCAAGGCCCGCAGACACCTGCGAGACACTGGCGCCGAGTTTGTGCACCATAACTGCCGGCAGCTGACCCGGGTTTATCCCAGCGGCTTCCGGACCGACTCCTCCAACTTCAACCCTCAGGAAATGTGGAACGCCGGCTGCCAAATCGTTGCGCTGAACTTCCAGACAGCGGGCGAGGGGATGGATCTGAATGACGGGATGTTCAGGCAGAACGGCGGCTGTGGCTACGTCCTAAAGCCCAGCTTCATGAGAGACGCCGAGAAAACATTCGACCCCGAGACTCCGCAAAAACGGGACGGCTACCAACCGGTCACCCTCACCATCCAGgtgatCAGCGGTCAGCAGCTTCCCAAAGTCAACATTAAAGAGGACTCGATCGTGGACCCGCTGGTCCGAGTGGAGATCTACGGGGTTCCTCTGGACCAGAACAGACAGGAGACCAGATACATAGACAACAACGGGTTTAACCCGGTGTGGTACGACACTCTGCGCTTCACCGTGCACGCTCCTGAGCTCGCCATGGTGCGCTTCGTGGTCGAAGACTACGACAAGACGTCGAAAAATGACTTTGTGGGTCAGTACACGCTGCCGCTCCGCTGCATGCAGCAAGGTTATCGGCATATTCACCTTTTGTCCAAAGATGGAACCAGTATTCCTCCCTCATCTTTATTCGTACACATCCGGATCGCAGAAATGTAATAAACCTTCTCAGCTTTTCATCCTCAGCACAGATGATTGAGTTCCTTCCTGTATGACTCCTAAAATAGTATTTATTCTTGTTGTTATTTGATGTGAATAAATACTACGCCAAATGTTTCGTGGTTGTTGGCAGCAGCTGTAACGAgatgtgcatgttttttttttgtttagttcaCTATCGTGTGTGTAATTTGTTCCTGTGATTGACTTGAACTTTGCTGCTCATATTTGGTCTAACTGTGACTGTAGCGCTCAAACGCTGAAATGTTGAAACGctgaaatggttaaaatgctgaaatgCTGAAACGCTGAAATGTTTGAAACGCTGAAAAcactgaaatgtttaaaatgttgaaacgctgaaatgtttaaaatgctgAAACGCTTTAATGTTGAAAcactgaaatgtttaaaatgctgaaacgctgaaatgtttaaaatgctgAAACGCTATAATGTTGAAACgctgaaatgtttaaaatgctgAAATGCCGAAATGTTTGAAACGCTGAAAAcactgaaatgtttaaaatgctgaaacgctgaaatgtttaaaatgctgaaacgctgaaatgtttaaaatgttgaaacgctgaaatgt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007340 acrosome reaction biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320541 lncRNA upstream 81341 20383386 ~ 20406326 (+) False cd99
TU320544 lncRNA upstream 107170 20378425 ~ 20380497 (+) True G236268
TU320543 lncRNA upstream 109927 20375595 ~ 20377740 (+) False LOC120554192
TU320532 lncRNA upstream 152697 20334361 ~ 20334970 (+) True G236260
TU320530 lncRNA upstream 189027 20298376 ~ 20298640 (+) True G236258
TU320596 lncRNA downstream 1760 20511674 ~ 20511988 (+) True G236304
TU320604 lncRNA downstream 47978 20557892 ~ 20558095 (+) True G236312
TU320605 lncRNA downstream 48341 20558255 ~ 20558599 (+) True G236313
TU320617 lncRNA downstream 123964 20633878 ~ 20635845 (+) False LOC120554627
XR_005638522.1 lncRNA downstream 151463 20661377 ~ 20662785 (+) True LOC120554584
XM_039793628.1 mRNA upstream 7341 20459974 ~ 20480326 (+) True LOC120554612
XM_039793629.1 mRNA upstream 7341 20459986 ~ 20480326 (+) False LOC120554612
XM_039792555.1 mRNA upstream 68549 20409012 ~ 20419118 (+) True gyg2
XM_039792920.1 mRNA upstream 81341 20383321 ~ 20406326 (+) True cd99
XM_039792922.1 mRNA upstream 90288 20383318 ~ 20397379 (+) False cd99
XM_039793639.1 mRNA downstream 85181 20595095 ~ 20635922 (+) True LOC120554627
XM_039792556.1 mRNA downstream 183046 20692960 ~ 20694611 (+) True LOC120554008
XM_039792557.1 mRNA downstream 196478 20706392 ~ 20707535 (+) True LOC120554009
XM_039793231.1 mRNA downstream 292353 20802267 ~ 20832663 (+) True fmnl2b
XM_039793203.1 mRNA downstream 366517 20876431 ~ 20886020 (+) True cavin2b
TU320542 other upstream 90348 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 253872 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 490000 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2305855 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 2315713 18167286 ~ 18171954 (+) True G235775
TU320664 other downstream 305822 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 402741 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 792412 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 898013 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 898013 21407927 ~ 21422915 (+) True G236461

Expression Profile