RNA id: TU320604


Basic Information

Item Value
RNA id TU320604
length 204
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G236312
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20557892 ~ 20558095 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctcgttcgagatgaactgcgcctcgcctgtaaagtagacgagagcaggcggcagcagcggggggcggtgacaaaagtccgctctcaagtcggacagttttccagctgactccagcagccttcaggctgaacaggaagtgacagaaacacggtggtccgattccgatttaataaaatgttatcagacccatatatcagctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320596 lncRNA upstream 45904 20511674 ~ 20511988 (+) True G236304
TU320582 lncRNA upstream 46816 20508154 ~ 20511076 (+) False LOC120554724
TU320541 lncRNA upstream 151566 20383386 ~ 20406326 (+) False cd99
TU320544 lncRNA upstream 177395 20378425 ~ 20380497 (+) True G236268
TU320543 lncRNA upstream 180152 20375595 ~ 20377740 (+) False LOC120554192
TU320605 lncRNA downstream 160 20558255 ~ 20558599 (+) True G236313
TU320617 lncRNA downstream 75783 20633878 ~ 20635845 (+) False LOC120554627
XR_005638522.1 lncRNA downstream 103282 20661377 ~ 20662785 (+) True LOC120554584
TU320632 lncRNA downstream 119093 20677188 ~ 20677431 (+) True G236334
XR_005638268.1 lncRNA downstream 137829 20695924 ~ 20696532 (+) True LOC120554017
XM_039793731.1 mRNA upstream 47978 20487667 ~ 20509914 (+) True LOC120554724
XM_039793628.1 mRNA upstream 77566 20459974 ~ 20480326 (+) True LOC120554612
XM_039793629.1 mRNA upstream 77566 20459986 ~ 20480326 (+) False LOC120554612
XM_039792555.1 mRNA upstream 138774 20409012 ~ 20419118 (+) True gyg2
XM_039792920.1 mRNA upstream 151566 20383321 ~ 20406326 (+) True cd99
XM_039793639.1 mRNA downstream 37000 20595095 ~ 20635922 (+) True LOC120554627
XM_039792556.1 mRNA downstream 134865 20692960 ~ 20694611 (+) True LOC120554008
XM_039792557.1 mRNA downstream 148297 20706392 ~ 20707535 (+) True LOC120554009
XM_039793231.1 mRNA downstream 244172 20802267 ~ 20832663 (+) True fmnl2b
XM_039793203.1 mRNA downstream 318336 20876431 ~ 20886020 (+) True cavin2b
XR_005638570.1 other upstream 47947 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 160573 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 324097 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 560225 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2376080 18176825 ~ 18181812 (+) True G235778
TU320664 other downstream 257641 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 354560 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 744231 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 849832 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 849832 21407927 ~ 21422915 (+) True G236461

Expression Profile