RNA id: TU320617


Basic Information

Item Value
RNA id TU320617
length 1760
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC120554627
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20595095 ~ 20635922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACCTGTACTACTCCACCGCCGCCGGCTCCTACCAGTTCTCTATGATGGCTGGGGGGGCCAGCGGCGACTCACGCTCCCCGCCAAGGATCTTGCCACCCTGCACCAACGCCTCCACAGGCTCCGCTCTCCTGCACCCCTCGCTGCCCAATCAGAACGAAGTAGTCGGTGTGGAGGTGGAGTCCAGCCACAGCAGCTCACCAACCAACATGGCCGCAGCTGAAGCTGTCTGGAGACCGTACTGAACCCCTAACCCTGCAGATCGTACTGAAcccctaaccctgcagactgtaCTGAACCACTAACCCTGCAGACCGTACGGAACCCCTAACCTTGGAGACCATTCTGAACCCCTAACCCTGGAGACTGTACTGAAGACCTTACCCTGGAGACCGTACTGAACCCCTAATCCTGGAGACTGTACTGAAGACCTAATCCTGCAGATCATACTGAACCCCTAACCCTGGACTGAACATCTAACCAACTGAAACCCAACAGAAACCCGGGAGAACCTCACTGGCCCCAACCTCAACGATCCAACATGGCGCTCTATGTATATTGTTTCTTATTAATAAAATGGTTGAGTGATTTCCCCAAAAAGCTGATGGAAGATATATCAGGTACAGTCAGTGTTGGTTTATGTGTGCACATGGGACTTATATATAagaaaaatattgaatatttaCAGATTTATCCTTCAAGAGAGAGTCTGGGTGTGTTTCATACACACCGGTTGTTGCATGTGAGACAAAAGATTGTCCTATGTTTGACCTGAGAGAAACCCTCCGGCAGTCCAGTTGGTATGGTCTCACCCTATCCCGGCTCATAGTCAGCTTTTCTCAGCTTCATTTcactgtaaagaccgctaaacttaactgtcatgtgaccggccGGCAGTCGCTtaattttgtaggatatcatacaaattgttgtATCATGGGAATGCGGTTACAGTGAGAAGGGAGGAAATGTCGGGACACATGCTACTATCAGTTAGCAGTGATGTTAATTGTCACCTATCGATGCAGTTCCCTAGGTGTTCCTTGGGTAAACTGCATCTCAGGAAGTCTGCTgactcattatttttttatatatgtgcaCTGATATTTGGGAAAACTTTACGTCATCACTTGACCAGGACAAGTGAGTCATCCTGATAAAAAGCCGTGACTGGACCTAACAGAGGAGCTTCTACTGAATGGAAGCACTCCGTACGGACAAACGGAGGTTTTACAGACCGATAAATGGAGGTTTTACGAACCGGTAAACGGAGGTTGTACACTGACAAAGCGCATGCAGCAGCACTGGACTGATCTAGAGTCAGCTTCCTTTGTAAAATAACATGAATATTGTTGATGTTAATGTAGTGTACAGATGATTATGACGGCCTGTTTGTGTTTATCTGTCCATCTTTCCATGGTTTATTTTAACTCTTGGGTGATATTTTTTACTAAACTCAGCCCAAAACAAAGATACACGATGACTTCATTCACTTTGGGCccaaatcaaacaaaaatggTGACATAATAAACCAAAAATTCAGTCGATTTATTCCTTATTTATTACAGACAGTCTGAACTAGACTGTCCACAGCGACAAACCATTACAGCATGGAGTTTTATAAAATGCTTTAATTTATTCCTACAATACCATTTGTTGGTAGCATTTTAAGTATGTGTGTTgatctgtactgtatataaccaTAAATTATACCTGCATATGGTCATGttttcatcctctctctctcgttgtctctctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320605 lncRNA upstream 75279 20558255 ~ 20558599 (+) True G236313
TU320604 lncRNA upstream 75783 20557892 ~ 20558095 (+) True G236312
TU320596 lncRNA upstream 121890 20511674 ~ 20511988 (+) True G236304
TU320582 lncRNA upstream 122802 20508154 ~ 20511076 (+) False LOC120554724
TU320541 lncRNA upstream 227552 20383386 ~ 20406326 (+) False cd99
XR_005638522.1 lncRNA downstream 25532 20661377 ~ 20662785 (+) True LOC120554584
TU320632 lncRNA downstream 41343 20677188 ~ 20677431 (+) True G236334
XR_005638268.1 lncRNA downstream 60079 20695924 ~ 20696532 (+) True LOC120554017
TU320649 lncRNA downstream 116771 20752616 ~ 20753017 (+) True G236346
TU320666 lncRNA downstream 133631 20769476 ~ 20841778 (+) False fmnl2b
XM_039793731.1 mRNA upstream 123964 20487667 ~ 20509914 (+) True LOC120554724
XM_039793628.1 mRNA upstream 153552 20459974 ~ 20480326 (+) True LOC120554612
XM_039793629.1 mRNA upstream 153552 20459986 ~ 20480326 (+) False LOC120554612
XM_039792555.1 mRNA upstream 214760 20409012 ~ 20419118 (+) True gyg2
XM_039792920.1 mRNA upstream 227552 20383321 ~ 20406326 (+) True cd99
XM_039792556.1 mRNA downstream 57115 20692960 ~ 20694611 (+) True LOC120554008
XM_039792557.1 mRNA downstream 70547 20706392 ~ 20707535 (+) True LOC120554009
XM_039793231.1 mRNA downstream 166422 20802267 ~ 20832663 (+) True fmnl2b
XM_039793203.1 mRNA downstream 240586 20876431 ~ 20886020 (+) True cavin2b
XM_039793634.1 mRNA downstream 252124 20887969 ~ 20889752 (+) True ebpl
XR_005638570.1 other upstream 123933 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 236559 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 400083 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 636211 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2452066 18176825 ~ 18181812 (+) True G235778
TU320664 other downstream 179891 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 276810 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 666481 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 772082 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 772082 21407927 ~ 21422915 (+) True G236461

Expression Profile